Detail information of GWHGAAZE027828


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP12995.11.3135E-134unnamed protein product [Coffea canephora]
Swissprottr|Q8RX22|MIP1_ARATH7E-86MND1-interacting protein 1
trEMBLtr|A0A068UWR5|A0A068UWR5_COFCA5E-135Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313|EMBL:CDP12995.1}
TAIR10AT2G35330.17E-86RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2917171729172595-
GWHAAZE00000008mRNA2917171729172595-
GWHAAZE00000008exon2917171729172595-
GWHAAZE00000008CDS2917171729172595-
Transcript Sequence

Network for GWHGAAZE027828

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0145GO:0009379 Holliday junction helicase complex GOslim:cellular_component
GO:0009378 four-way junction helicase activity GOslim:molecular_function
GO:0006310 DNA recombination GOslim:biological_process
GO:0006281 DNA repair GOslim:biological_process
Ubiquitin_U-box family Ubiquitin_U-box family
Ubiquitin_RING family Ubiquitin_RING family


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0009379cellular_componentHolliday junction helicase complex
GO:0005524molecular_functionATP binding
GO:0009378molecular_functionfour-way junction helicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.320
SRR3591706second leaf6.665
SRR3591707mature leaf5.557
SRR3591708Shoot apex7.676
SRR3591709Stem6.169
SRR3591710White floral bud6.542
SRR3591711White flower11.092
SRR3591712Green floral bud7.234
SRR3591713Yellow flower7.887
SRP173429 SRR8316895Juvenile bud stage 5.628
SRR8316896Juvenile bud stage 7.612
SRR8316897Juvenile bud stage 4.296
SRR8316894Third green stage 2.660
SRR8316900Third green stage 9.654
SRR8316901Third green stage 7.140
SRR8316898Complete white stage 4.300
SRR8316899Complete white stage 11.019
SRR8316903Complete white stage 7.392
SRR8316902Silver flowering stage4.584
SRR8316904Silver flowering stage9.523
SRR8316905Silver flowering stage3.594
SRR8316906Gold flowering stage 14.256
SRR8316907Gold flowering stage 15.177
SRR8316908Gold flowering stage 19.408
SRP132670SRR6706286Control10.488
SRR6706287Light intensity 50%10.048
SRR6706288Light intensity 20%10.798
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.569
CNS0095593Slightly white alabastrum(diploid) 22.480
CNS0095594Slightly white alabastrum(diploid) 32.525
CNS0095595Whole white alabastrum(diploid) 23.610
CNS0095596Whole white alabastrum(diploid) 31.965
CNS0095597Whole white alabastrum(diploid) 42.037
CNS0095598Silvery flower (diploied) 15.715
CNS0095599Silvery flower (diploied) 23.128
CNS0095600Silvery flower (diploied) 313.775
CNS0095601Golden flower (diploid) 16.914
CNS0095602Golden flower (diploid) 214.944
CNS0095603Golden flower (diploid) 314.377
CNS0095604Slightly white alabastrum(tetraploid) 15.066
CNS0095605Slightly white alabastrum(tetraploid) 23.968
CNS0095606Slightly white alabastrum(tetraploid) 314.214
CNS0095607Whole white alabastrum(tetraploid) 13.148
CNS0095608Whole white alabastrum(tetraploid) 22.828
CNS0095609Whole white alabastrum(tetraploid) 311.631
CNS0095610Silvery flower (diploied) 123.803
CNS0095611Silvery flower (diploied) 220.893
CNS0095612Silvery flower (diploied) 310.843
CNS0095613Golden flower (tetraploid) 17.246
CNS0095614Golden flower (tetraploid) 218.994
CNS0095615Golden flower (tetraploid) 310.171
CRA001975CRR073297Stem 16.728
CRR073298Stem 26.709
CRR073299Stem 37.179
CRR073300Leaf 16.922
CRR073301Leaf 25.420
CRR073302Leaf 35.179
CRR073303Juvenile bud 15.637
CRR073304Juvenile bud 24.465
CRR073305Juvenile bud 38.361
CRR073306Third green 11.550
CRR073307Third green 21.021
CRR073308Third green 31.743
CRR073309Second white 12.874
CRR073310Second white 22.948
CRR073311Second white 34.091
CRR073312Silver flowering 11.668
CRR073313Silver flowering 24.419
CRR073314Silver flowering 32.235
CRR073315Gold flowering 12.740
CRR073316Gold flowering 26.617
CRR073317Gold flowering 35.254
CRR073318Tawny withering 13.906
CRR073319Tawny withering 22.129
CRR073320Tawny withering 32.840