Gene detail

Detail information of GWHGAAZE027837

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP34641.1	1.06864E-82	hypothetical protein JCGZ_11985 [Jatropha curcas]
Swissprot	tr\|Q93ZB1\|LOL1_ARATH	8E-77	Protein LOL1
trEMBL	tr\|A0A067KEI2\|A0A067KEI2_JATCU	4E-83	Uncharacterized protein {ECO:0000313\|EMBL:KDP34641.1}
TAIR10	AT1G32540.3	1E-48	lsd one like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	29319782	29321587	+
GWHAAZE00000008	mRNA	29319782	29321587	+
GWHAAZE00000008	exon	29319782	29319865	+
GWHAAZE00000008	exon	29320663	29320792	+
GWHAAZE00000008	exon	29321220	29321333	+
GWHAAZE00000008	exon	29321427	29321587	+
GWHAAZE00000008	CDS	29319782	29319865	+
GWHAAZE00000008	CDS	29320663	29320792	+
GWHAAZE00000008	CDS	29321220	29321333	+
GWHAAZE00000008	CDS	29321427	29321587	+

Transcript Sequence
>GWHTAAZE027871 TTTACAATGCCTGTTCCTCTTGCTCCTTATCCTACACCACCAGCTCCAGCTCCATCTCCATTTACACCGCCGGCAAATGGTATACTGTGTCGAACAACAGGTGCACAGAGCCAGCTTGTGTGTTCGGGATGTCGGAATCTTTTACTTTACCCGGTCGGAGCAACCTCAGTTTGTTGCGCTGTTTGCAATGCAGTCACAGCTGTTCCACCTCCCGGCACAGAAATGGCTCAGCTGGTTTGTGGAGGATGCCACACATTACTAATGTACATACGCGGGGCAACAAGCGTGCAGTGTTCTTGTTGTCACACCATCAATTTAGCACTGGAAGCAAATCAAGTAGCTCATGTTAATTGTGGGAACTGTCGGATGCTGTTGATGTACCAGTATGGAGCGCGATCTGTCAAATGTGCCGTTTGCAATTTTGTGACATCAGTTGGGGTTAGTATTAAAAGAGGACTTAATATATTCCATATGCAATTATTAAAGTAA

Network for GWHGAAZE027837

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06943.13	zf-LSD1	41	65	1.00E-10
PF06943.13	zf-LSD1	80	104	1.30E-12
PF06943.13	zf-LSD1	118	142	1.00E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-LSD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	186.083
	SRR3591706	second leaf	225.781
	SRR3591707	mature leaf	82.667
	SRR3591708	Shoot apex	187.609
	SRR3591709	Stem	94.364
	SRR3591710	White floral bud	5.097
	SRR3591711	White flower	11.133
	SRR3591712	Green floral bud	9.721
	SRR3591713	Yellow flower	35.819
SRP173429	SRR8316895	Juvenile bud stage	26.809
	SRR8316896	Juvenile bud stage	20.458
	SRR8316897	Juvenile bud stage	8.866
	SRR8316894	Third green stage	7.129
	SRR8316900	Third green stage	8.852
	SRR8316901	Third green stage	12.245
	SRR8316898	Complete white stage	2.203
	SRR8316899	Complete white stage	13.466
	SRR8316903	Complete white stage	5.442
	SRR8316902	Silver flowering stage	1.318
	SRR8316904	Silver flowering stage	4.010
	SRR8316905	Silver flowering stage	1.098
	SRR8316906	Gold flowering stage	1.918
	SRR8316907	Gold flowering stage	2.025
	SRR8316908	Gold flowering stage	3.860
SRP132670	SRR6706286	Control	19.623
	SRR6706287	Light intensity 50%	18.499
	SRR6706288	Light intensity 20%	14.375
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.791
	CNS0095593	Slightly white alabastrum(diploid) 2	16.963
	CNS0095594	Slightly white alabastrum(diploid) 3	26.007
	CNS0095595	Whole white alabastrum(diploid) 2	10.108
	CNS0095596	Whole white alabastrum(diploid) 3	11.180
	CNS0095597	Whole white alabastrum(diploid) 4	8.326
	CNS0095598	Silvery flower (diploied) 1	33.110
	CNS0095599	Silvery flower (diploied) 2	38.392
	CNS0095600	Silvery flower (diploied) 3	13.476
	CNS0095601	Golden flower (diploid) 1	46.215
	CNS0095602	Golden flower (diploid) 2	41.911
	CNS0095603	Golden flower (diploid) 3	38.239
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.591
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.371
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.902
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.802
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.992
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.205
	CNS0095610	Silvery flower (diploied) 1	10.986
	CNS0095611	Silvery flower (diploied) 2	12.344
	CNS0095612	Silvery flower (diploied) 3	3.923
	CNS0095613	Golden flower (tetraploid) 1	16.153
	CNS0095614	Golden flower (tetraploid) 2	36.323
	CNS0095615	Golden flower (tetraploid) 3	114.690
CRA001975	CRR073297	Stem 1	27.718
	CRR073298	Stem 2	18.653
	CRR073299	Stem 3	25.627
	CRR073300	Leaf 1	5.886
	CRR073301	Leaf 2	9.122
	CRR073302	Leaf 3	8.558
	CRR073303	Juvenile bud 1	3.555
	CRR073304	Juvenile bud 2	3.583
	CRR073305	Juvenile bud 3	7.396
	CRR073306	Third green 1	8.125
	CRR073307	Third green 2	7.823
	CRR073308	Third green 3	8.961
	CRR073309	Second white 1	5.919
	CRR073310	Second white 2	3.498
	CRR073311	Second white 3	0.977
	CRR073312	Silver flowering 1	1.044
	CRR073313	Silver flowering 2	2.405
	CRR073314	Silver flowering 3	1.992
	CRR073315	Gold flowering 1	64.424
	CRR073316	Gold flowering 2	65.219
	CRR073317	Gold flowering 3	58.963
	CRR073318	Tawny withering 1	63.491
	CRR073319	Tawny withering 2	36.890
	CRR073320	Tawny withering 3	32.655