Gene detail

Detail information of GWHGAAZE027958

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009596481.1	1.1299E-175	PREDICTED: isoflavone reductase homolog [Nicotiana tomentosiformis]
COG	YP_001655687.1	2E-13	chaperon-like protein for quinone binding in photosystem II
Swissprot	tr\|P52581\|IFRH_LUPAL	2E-171	Isoflavone reductase homolog
trEMBL	tr\|B7FI60\|B7FI60_MEDTR	3E-175	Uncharacterized protein {ECO:0000313\|EMBL:AFK33813.1}
TAIR10	AT1G32100.1	2E-118	pinoresinol reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	32432645	32437708	-
GWHAAZE00000008	mRNA	32432645	32437708	-
GWHAAZE00000008	exon	32432645	32432811	-
GWHAAZE00000008	exon	32434464	32434667	-
GWHAAZE00000008	exon	32435059	32435299	-
GWHAAZE00000008	exon	32437373	32437708	-
GWHAAZE00000008	CDS	32437373	32437708	-
GWHAAZE00000008	CDS	32435059	32435299	-
GWHAAZE00000008	CDS	32434464	32434667	-
GWHAAZE00000008	CDS	32432645	32432811	-

Transcript Sequence
>GWHTAAZE027992 ATGCAAATGGAGAAGAGCAAGGTTCTTGTAGTGGGAGCAAGTGGTTACATTGGGAGGAGAATAGTGAAAGCTAGTTTAGCACAAGGACATGAAACTTATGTTCTTCAAAGGCGAGATGCTGGCCTTGACATTGATAAGTTACCATTGCTATTGTCCTTCAAGGCCCAAGGTGCTCGTCTAATACACGGCTCGTTTTCCGATCACCGGAGCATCGTCGATGCCGTTAAACATGTGGATGTTGTCATTTGCACCATCTCCGGCTCCACTTCCAAGAATCACAATATTTTGCTTCAGCTCAAACTTATTGATGCCATCAAAGAAGCTGGAAACATCAAGCGTTTTCTGCCCTCGGAATTTGGGATGAACCCAGCAAGAATGGGGCATGCTCTTGAACCAGGGAATGTGGCATTTGAGGTGAAGATGAAAGTGAGAGAGGCCATTGAAAAGTCCAAAATACCCTTCACTTATGTCTCTGCTAATTGCTTTGCTGGTTTCTTTGCTGGTAATCTTTCCCAATTTGACACACTTTTTCCACCCAGGGATAAAGTTTGCCTTTATGGAGATGGCAATGTTAAAGCAATTTATTTGGACGAAGATGATGTCGCGACGTACACAATTAAAACTATAGATGATCCTCGTACATTGAACAAAACATTGTACCTACGGCCACCGGAGAACATCATCACCCAAAGAGAATTGGTTGAGAAGTGGGAAAATATTTTGGGGAAGAAATTAGAGAAACATAGCATTTCTGCAGAAGAATTACTAGCTTCTATGAAAGGAGTGGAGTATGATGGGCAAGTAGCATTGGGACACATCTACCACATATTCTATGAAGGTTGTTTGACAAACTTTGAATTAAGAGAGGAAGATGAAGAAGAAGCTTCTAAGCTCTACCCAGATGTTCAATACACTCGCATGGATGCTTATTTGAAACGTTATCTCTGA

Network for GWHGAAZE027958

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05368.14	NmrA	8	262	4.80E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21568	PLR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of various secondary metabolites - part 2	map00998

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.638
	SRR3591706	second leaf	37.208
	SRR3591707	mature leaf	6.808
	SRR3591708	Shoot apex	12.205
	SRR3591709	Stem	5.371
	SRR3591710	White floral bud	4.381
	SRR3591711	White flower	9.131
	SRR3591712	Green floral bud	0.510
	SRR3591713	Yellow flower	7.115
SRP173429	SRR8316895	Juvenile bud stage	0.092
	SRR8316896	Juvenile bud stage	0.330
	SRR8316897	Juvenile bud stage	0.241
	SRR8316894	Third green stage	0.036
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.400
	SRR8316898	Complete white stage	0.545
	SRR8316899	Complete white stage	0.330
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.174
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	1.037
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	1.410
SRP132670	SRR6706286	Control	0.408
	SRR6706287	Light intensity 50%	0.444
	SRR6706288	Light intensity 20%	0.175
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.240
	CNS0095593	Slightly white alabastrum(diploid) 2	0.145
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.093
	CNS0095596	Whole white alabastrum(diploid) 3	0.049
	CNS0095597	Whole white alabastrum(diploid) 4	0.035
	CNS0095598	Silvery flower (diploied) 1	3.738
	CNS0095599	Silvery flower (diploied) 2	3.080
	CNS0095600	Silvery flower (diploied) 3	0.599
	CNS0095601	Golden flower (diploid) 1	0.714
	CNS0095602	Golden flower (diploid) 2	1.948
	CNS0095603	Golden flower (diploid) 3	0.837
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.590
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.401
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.160
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.878
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.145
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.998
	CNS0095610	Silvery flower (diploied) 1	4.194
	CNS0095611	Silvery flower (diploied) 2	3.776
	CNS0095612	Silvery flower (diploied) 3	3.289
	CNS0095613	Golden flower (tetraploid) 1	3.412
	CNS0095614	Golden flower (tetraploid) 2	4.358
	CNS0095615	Golden flower (tetraploid) 3	3.840
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.115
	CRR073299	Stem 3	0.157
	CRR073300	Leaf 1	0.139
	CRR073301	Leaf 2	0.044
	CRR073302	Leaf 3	0.083
	CRR073303	Juvenile bud 1	0.229
	CRR073304	Juvenile bud 2	0.163
	CRR073305	Juvenile bud 3	0.048
	CRR073306	Third green 1	0.024
	CRR073307	Third green 2	0.048
	CRR073308	Third green 3	0.123
	CRR073309	Second white 1	0.084
	CRR073310	Second white 2	0.336
	CRR073311	Second white 3	0.340
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.349
	CRR073314	Silver flowering 3	0.018
	CRR073315	Gold flowering 1	0.233
	CRR073316	Gold flowering 2	0.604
	CRR073317	Gold flowering 3	0.192
	CRR073318	Tawny withering 1	37.780
	CRR073319	Tawny withering 2	37.298
	CRR073320	Tawny withering 3	2.443