Detail information of GWHGAAZE028236


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN80346.17.6426E-158hypothetical protein VITISV_003134 [Vitis vinifera]
Swissprottr|Q9FJD5|LAC17_ARATH2E-126Laccase-17 (Precursor)
trEMBLtr|A5ARD9|A5ARD9_VITVI3E-158Laccase {ECO:0000256|RuleBase:RU361119}
TAIR10AT5G60020.13E-89laccase 17

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene4795026647951618+
GWHAAZE00000008mRNA4795026647951618+
GWHAAZE00000008exon4795026647951005+
GWHAAZE00000008exon4795140547951618+
GWHAAZE00000008CDS4795026647951005+
GWHAAZE00000008CDS4795140547951618+
Transcript Sequence

Network for GWHGAAZE028236

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0249GO:0005507 copper ion binding GOslim:molecular_function
GO:0055114 oxidation-reduction process GOslim:biological_process
GO:0046274 lignin catabolic process GOslim:biological_process
GO:0052716 hydroquinone:oxygen oxidoreductase activity GOslim:molecular_function
GO:0048046 apoplast GOslim:cellular_component
GO:0016491 oxidoreductase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07731.15Cu-oxidase_21492517.50E-28
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0005507molecular_functioncopper ion binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.555
SRR3591706second leaf1.887
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.817
SRR3591709Stem1.196
SRR3591710White floral bud2.177
SRR3591711White flower0.396
SRR3591712Green floral bud9.106
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.188
SRR8316896Juvenile bud stage 1.738
SRR8316897Juvenile bud stage 0.628
SRR8316894Third green stage 1.556
SRR8316900Third green stage 7.124
SRR8316901Third green stage 8.150
SRR8316898Complete white stage 0.255
SRR8316899Complete white stage 1.076
SRR8316903Complete white stage 0.411
SRR8316902Silver flowering stage0.044
SRR8316904Silver flowering stage0.211
SRR8316905Silver flowering stage0.060
SRR8316906Gold flowering stage 0.019
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.053
SRP132670SRR6706286Control2.961
SRR6706287Light intensity 50%2.389
SRR6706288Light intensity 20%2.738
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.069
CNS0095593Slightly white alabastrum(diploid) 22.917
CNS0095594Slightly white alabastrum(diploid) 31.647
CNS0095595Whole white alabastrum(diploid) 21.411
CNS0095596Whole white alabastrum(diploid) 32.810
CNS0095597Whole white alabastrum(diploid) 41.636
CNS0095598Silvery flower (diploied) 10.134
CNS0095599Silvery flower (diploied) 20.070
CNS0095600Silvery flower (diploied) 30.099
CNS0095601Golden flower (diploid) 10.034
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.480
CNS0095605Slightly white alabastrum(tetraploid) 20.671
CNS0095606Slightly white alabastrum(tetraploid) 319.368
CNS0095607Whole white alabastrum(tetraploid) 10.143
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 312.081
CNS0095610Silvery flower (diploied) 10.000
CNS0095611Silvery flower (diploied) 20.000
CNS0095612Silvery flower (diploied) 30.077
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.529
CRR073298Stem 20.846
CRR073299Stem 31.249
CRR073300Leaf 13.232
CRR073301Leaf 21.823
CRR073302Leaf 33.582
CRR073303Juvenile bud 10.574
CRR073304Juvenile bud 20.010
CRR073305Juvenile bud 30.624
CRR073306Third green 10.387
CRR073307Third green 20.518
CRR073308Third green 30.131
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.031
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.100