Detail information of GWHGAAZE028240


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN80346.13.1869E-171hypothetical protein VITISV_003134 [Vitis vinifera]
COGYP_007590081.14E-18putative multicopper oxidase
Swissprottr|Q9FJD5|LAC17_ARATH7E-156Laccase-17 (Precursor)
trEMBLtr|A5ARD9|A5ARD9_VITVI1E-171Laccase {ECO:0000256|RuleBase:RU361119}
TAIR10AT5G60020.11E-122laccase 17

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene4800416648005694-
GWHAAZE00000008mRNA4800416648005694-
GWHAAZE00000008exon4800553148005694-
GWHAAZE00000008exon4800531348005399-
GWHAAZE00000008exon4800498548005229-
GWHAAZE00000008exon4800476548004893-
GWHAAZE00000008exon4800454148004669-
GWHAAZE00000008exon4800416648004455-
GWHAAZE00000008CDS4800553148005694-
GWHAAZE00000008CDS4800531348005399-
GWHAAZE00000008CDS4800498548005229-
GWHAAZE00000008CDS4800476548004893-
GWHAAZE00000008CDS4800454148004669-
GWHAAZE00000008CDS4800416648004455-
Transcript Sequence

Network for GWHGAAZE028240

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0249GO:0005507 copper ion binding GOslim:molecular_function
GO:0055114 oxidation-reduction process GOslim:biological_process
GO:0046274 lignin catabolic process GOslim:biological_process
GO:0052716 hydroquinone:oxygen oxidoreductase activity GOslim:molecular_function
GO:0048046 apoplast GOslim:cellular_component
GO:0016491 oxidoreductase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07732.16Cu-oxidase_3471478.90E-35
PF00394.23Cu-oxidase1602413.70E-20
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0005507molecular_functioncopper ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.251
SRR3591706second leaf0.580
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.095
SRR3591709Stem0.754
SRR3591710White floral bud0.982
SRR3591711White flower0.140
SRR3591712Green floral bud2.783
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.339
SRR8316896Juvenile bud stage 0.255
SRR8316897Juvenile bud stage 0.032
SRR8316894Third green stage 0.272
SRR8316900Third green stage 0.578
SRR8316901Third green stage 1.621
SRR8316898Complete white stage 0.020
SRR8316899Complete white stage 0.193
SRR8316903Complete white stage 0.082
SRR8316902Silver flowering stage0.011
SRR8316904Silver flowering stage0.162
SRR8316905Silver flowering stage0.011
SRR8316906Gold flowering stage 0.014
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.772
SRR6706287Light intensity 50%0.221
SRR6706288Light intensity 20%0.364
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.044
CNS0095593Slightly white alabastrum(diploid) 20.261
CNS0095594Slightly white alabastrum(diploid) 30.031
CNS0095595Whole white alabastrum(diploid) 20.111
CNS0095596Whole white alabastrum(diploid) 30.087
CNS0095597Whole white alabastrum(diploid) 40.156
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.016
CNS0095600Silvery flower (diploied) 30.160
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.083
CNS0095605Slightly white alabastrum(tetraploid) 20.085
CNS0095606Slightly white alabastrum(tetraploid) 35.698
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.015
CNS0095609Whole white alabastrum(tetraploid) 33.146
CNS0095610Silvery flower (diploied) 10.000
CNS0095611Silvery flower (diploied) 20.000
CNS0095612Silvery flower (diploied) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.682
CRR073298Stem 20.220
CRR073299Stem 30.907
CRR073300Leaf 10.707
CRR073301Leaf 21.026
CRR073302Leaf 31.225
CRR073303Juvenile bud 10.042
CRR073304Juvenile bud 20.408
CRR073305Juvenile bud 30.179
CRR073306Third green 10.114
CRR073307Third green 20.058
CRR073308Third green 30.106
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.008
CRR073318Tawny withering 10.032
CRR073319Tawny withering 20.002
CRR073320Tawny withering 30.003