Gene detail

Detail information of GWHGAAZE028470

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006450678.1	2.203E-143	hypothetical protein CICLE_v10009310mg [Citrus clementina]
COG	YP_006362975.1	4E-20	ribosomal RNA-processing protein RRP41/SKI6
Swissprot	tr\|Q84T68\|EXOS5_ORYSJ	1E-107	Exosome complex exonuclease RRP46 homolog
trEMBL	tr\|V4TTQ0\|V4TTQ0_9ROSI	8E-144	Uncharacterized protein {ECO:0000313\|EMBL:ESR63918.1}
TAIR10	AT3G46210.6	4E-108	Ribosomal protein S5 domain 2-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	57711110	57721325	+
GWHAAZE00000008	mRNA	57711110	57721325	+
GWHAAZE00000008	exon	57711110	57711215	+
GWHAAZE00000008	exon	57712161	57712274	+
GWHAAZE00000008	exon	57714070	57714170	+
GWHAAZE00000008	exon	57718297	57718332	+
GWHAAZE00000008	exon	57718683	57718755	+
GWHAAZE00000008	exon	57718839	57718906	+
GWHAAZE00000008	exon	57719151	57719283	+
GWHAAZE00000008	exon	57721213	57721325	+
GWHAAZE00000008	CDS	57711110	57711215	+
GWHAAZE00000008	CDS	57712161	57712274	+
GWHAAZE00000008	CDS	57714070	57714170	+
GWHAAZE00000008	CDS	57718297	57718332	+
GWHAAZE00000008	CDS	57718683	57718755	+
GWHAAZE00000008	CDS	57718839	57718906	+
GWHAAZE00000008	CDS	57719151	57719283	+
GWHAAZE00000008	CDS	57721213	57721325	+

Transcript Sequence
>GWHTAAZE028504 ATGGAAATAGATAGGGCAGATGGCCGTTCGCCGAATCAGTTGAGATTGCTCGCTTGTTCTAGAAGCACCCTAAATCGTGCCCATGGTTCTGCAAGTTGGTCTCAAGGGGAGACTAAGGTTCTTGCTGCAGTTTACGGACCTAAAGCTGGAACAAAGAAGAATGAAAACCCAGAAAAGGCTTGCATTGAAGTCATTTGGAAGCCAAAAACTGGGCAGATTGGCAAACCGGAAAAAGAGTACGAGATGATACTGAAGAAAACATTGCAAAGCATCTGCCTTCTGACAGTCAATCCAAATACCACAACTTCAATAATAGTTCAGGTTGTCAACGATGATGGTGCCGTATCCTTCATATTACTACTCCCATGTGCCATAAATGCGGCTTGTGCGGCCCTTGTAGATGCTGGAATTCCTTTGAAGCATCTTGCCGTTGCAATATGCTGTTGTCTAACGGAAAGTGGAGTGGTTATGCTGGACCCGAACAAGCTTGAAGAACAGAAAATGAAGGCATTTGTATATTTGGTTTTCCCGAACTCGATTGTGTCTGCACTTCCCGAAGGATTGTCAAAGGTTGGAGGCGAGCCGATGGAACATGGGATAATTTCATCTGTTACACACGGAGTAATGTCAGTGGATGATTACCTTCACTGCCTGCAAAGGGGACGTGCTGCCAGCGCAAAGTTGTCAGGTTTTCTTAGGAGAAGCTTGCAGTTGCAGCAGCAAGAAGTCCCACCACCAAAGTGA

Network for GWHGAAZE028470

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01138.22	RNase_PH	13	138	2.30E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12590	RRP46, EXOSC5	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.096
	SRR3591706	second leaf	4.052
	SRR3591707	mature leaf	2.935
	SRR3591708	Shoot apex	16.586
	SRR3591709	Stem	6.933
	SRR3591710	White floral bud	3.790
	SRR3591711	White flower	8.586
	SRR3591712	Green floral bud	5.411
	SRR3591713	Yellow flower	7.120
SRP173429	SRR8316895	Juvenile bud stage	9.194
	SRR8316896	Juvenile bud stage	10.794
	SRR8316897	Juvenile bud stage	4.900
	SRR8316894	Third green stage	4.040
	SRR8316900	Third green stage	10.639
	SRR8316901	Third green stage	9.375
	SRR8316898	Complete white stage	5.643
	SRR8316899	Complete white stage	17.157
	SRR8316903	Complete white stage	5.861
	SRR8316902	Silver flowering stage	4.512
	SRR8316904	Silver flowering stage	6.473
	SRR8316905	Silver flowering stage	2.585
	SRR8316906	Gold flowering stage	6.938
	SRR8316907	Gold flowering stage	7.250
	SRR8316908	Gold flowering stage	8.495
SRP132670	SRR6706286	Control	7.443
	SRR6706287	Light intensity 50%	8.060
	SRR6706288	Light intensity 20%	9.828
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.786
	CNS0095593	Slightly white alabastrum(diploid) 2	13.546
	CNS0095594	Slightly white alabastrum(diploid) 3	8.008
	CNS0095595	Whole white alabastrum(diploid) 2	8.699
	CNS0095596	Whole white alabastrum(diploid) 3	6.104
	CNS0095597	Whole white alabastrum(diploid) 4	5.385
	CNS0095598	Silvery flower (diploied) 1	9.960
	CNS0095599	Silvery flower (diploied) 2	7.262
	CNS0095600	Silvery flower (diploied) 3	7.193
	CNS0095601	Golden flower (diploid) 1	8.448
	CNS0095602	Golden flower (diploid) 2	8.161
	CNS0095603	Golden flower (diploid) 3	8.688
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.256
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.064
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.819
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.104
	CNS0095610	Silvery flower (diploied) 1	12.126
	CNS0095611	Silvery flower (diploied) 2	14.263
	CNS0095612	Silvery flower (diploied) 3	10.997
	CNS0095613	Golden flower (tetraploid) 1	7.966
	CNS0095614	Golden flower (tetraploid) 2	15.024
	CNS0095615	Golden flower (tetraploid) 3	8.651
CRA001975	CRR073297	Stem 1	14.561
	CRR073298	Stem 2	13.244
	CRR073299	Stem 3	12.836
	CRR073300	Leaf 1	15.984
	CRR073301	Leaf 2	15.233
	CRR073302	Leaf 3	14.859
	CRR073303	Juvenile bud 1	12.656
	CRR073304	Juvenile bud 2	8.706
	CRR073305	Juvenile bud 3	6.818
	CRR073306	Third green 1	4.445
	CRR073307	Third green 2	5.435
	CRR073308	Third green 3	3.772
	CRR073309	Second white 1	3.203
	CRR073310	Second white 2	7.075
	CRR073311	Second white 3	5.687
	CRR073312	Silver flowering 1	4.088
	CRR073313	Silver flowering 2	4.297
	CRR073314	Silver flowering 3	1.491
	CRR073315	Gold flowering 1	8.043
	CRR073316	Gold flowering 2	12.450
	CRR073317	Gold flowering 3	7.366
	CRR073318	Tawny withering 1	14.781
	CRR073319	Tawny withering 2	16.259
	CRR073320	Tawny withering 3	14.411