Gene detail

Detail information of GWHGAAZE028634

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009631279.1	PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like [Nicotiana tomentosiformis]
COG	YP_003570740.1	Bifunctional aspartokinase/homoserine dehydrogenase II
Swissprot	tr\|P37142\|AKH_DAUCA	Homoserine dehydrogenase (Precursor; Fragment)
trEMBL	tr\|W9SHL2\|W9SHL2_9ROSA	Bifunctional aspartokinase/homoserine dehydrogenase {ECO:0000313\|EMBL:EXC32456.1}
TAIR10	AT4G19710.2	aspartate kinase-homoserine dehydrogenase ii

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	62077671	62090952	-
GWHAAZE00000008	mRNA	62077671	62090952	-
GWHAAZE00000008	exon	62090834	62090952	-
GWHAAZE00000008	exon	62088721	62088794	-
GWHAAZE00000008	exon	62088239	62088613	-
GWHAAZE00000008	exon	62086128	62086216	-
GWHAAZE00000008	exon	62085436	62085739	-
GWHAAZE00000008	exon	62085114	62085166	-
GWHAAZE00000008	exon	62084818	62085032	-
GWHAAZE00000008	exon	62084623	62084710	-
GWHAAZE00000008	exon	62083676	62083789	-
GWHAAZE00000008	exon	62082975	62083073	-
GWHAAZE00000008	exon	62082415	62082609	-
GWHAAZE00000008	exon	62081571	62081653	-
GWHAAZE00000008	exon	62080807	62081032	-
GWHAAZE00000008	exon	62079867	62080012	-
GWHAAZE00000008	exon	62079270	62079405	-
GWHAAZE00000008	exon	62078873	62078956	-
GWHAAZE00000008	exon	62078661	62078753	-
GWHAAZE00000008	exon	62077671	62077916	-
GWHAAZE00000008	CDS	62090834	62090952	-
GWHAAZE00000008	CDS	62088721	62088794	-
GWHAAZE00000008	CDS	62088239	62088613	-
GWHAAZE00000008	CDS	62086128	62086216	-
GWHAAZE00000008	CDS	62085436	62085739	-
GWHAAZE00000008	CDS	62085114	62085166	-
GWHAAZE00000008	CDS	62084818	62085032	-
GWHAAZE00000008	CDS	62084623	62084710	-
GWHAAZE00000008	CDS	62083676	62083789	-
GWHAAZE00000008	CDS	62082975	62083073	-
GWHAAZE00000008	CDS	62082415	62082609	-
GWHAAZE00000008	CDS	62081571	62081653	-
GWHAAZE00000008	CDS	62080807	62081032	-
GWHAAZE00000008	CDS	62079867	62080012	-
GWHAAZE00000008	CDS	62079270	62079405	-
GWHAAZE00000008	CDS	62078873	62078956	-
GWHAAZE00000008	CDS	62078661	62078753	-
GWHAAZE00000008	CDS	62077671	62077916	-

Transcript Sequence
>GWHTAAZE028668 ATGGCGTTCTCAATCTCTCCATCGTATCCATACACCACATCATTGTCAAGAGACACCATTAAGAAGGTGAAGAAGATCACTACTTTCTCTCTCCTCCAACGCCCCCCTCCGATCTGCAAAACAGATTTTACTTCTCAGCTGGGGAGACGGGAGTTGTCAAATTTTCGTGTTTTTGCTTCAGTCACAAACACAGATGTTTCAGTTAATGAATCTGTCGAAAAAGTTCAGCTCGTTAAGGGTGACACCTGGTCTATTCATAAATTTGGTGGCACATGTGTGGGAAGTTCCCAAAGACTCTCGAATGTCGCAGACATAATTGTGAAGGATGATTCCGAAAGAAAGTTGGTTGTCGTGTCTGCAATGTCAAAGGTGACGGATATGATGTATGATCTTATTTACAAGGCACAGTCGCAAGATGAATCTTATGAATCTGCACTAGATGCTGTTCTAGAAAAGCACAAGTCAACAGCACATGATCTGCTTGAAGGGGATGACCTTGCCAGTTTCTTGTCTAAGTTGCATCATGACATCAATAACCTCAAAGCAATGCTTCGTGCAATATATATAGCTGGTCATGCTACGGAGTCTTTTTCAGATTTTGTTGTAGGACATGGAGAGTTATGGTCTGCTCACATATTGTCAGCTGTCATCAGAAAGAATGGGGTGGAATGCAGTTGGATGGACACGAGAAGTGTTCTTGTTGTAACTCCTGCCGGTTCTAATCAAGTTGATCCTGATTATGTGGCATCAGAGGAAAGACTTGAGAAATGGTTCTCTGAAAATCCATCCAAAACGATCATTGCAACTGGTTTTATAGCGAGCACCCCTCAAAATATCCCTACGACTTTAAAGAGAGATGGAAGTGACTTTTCTGCTGCTATAATGGGTGCTTTATTTAGGGCACGCCAAGTTACAATTTGGACCGATGTTGATGGCGTATATAGTGCAGACCCTAGAAAAGTTAGTGAGGCTGTGATACTGCAGACGTTATCATATCAGGAGGCCTGGGAAATGTCATATTTTGGGGCAAATGTTTTACATCCTCGTACAATCATTCCAGTGATGAGATATGACATTCCAATTGTTATAAGAAATATATTCAACCTATCTGCTCCGGGAACGATGATCTGCAGGCCTCCTCCTGATGAAACTGAAAATGGGGTGATATTGGAGTCTCTTGTCAAAGGATTTGCAACTATAGATAATTTGGCTCTTGTAAATGTTGAAGGAACTGGGATGGCTGGTGTTCCTGGTACAGCAAGTGCAATATTTGCTGCCGTGAAAGATGTGGGAGCTAACGTTGTGATGATATCCCAGGCTAGTAGTGAGCACTCTGTGTGCTTTGCTGTGCCCGAGAAGGAAGTAAAAGCTGTTGCTGAGGCTTTAGAGTCTAGGTTTCGTCAAGCTTTGGATGCTGGGCGTCTTTCGCAGGTTGCGATAATTCCAAATTGTAGCATTTTGGCAGCAGTTGGCCAAAAAATGGCAAGTACTCCTGGAGTTAGTGCCACACTTTTCAATGCACTTGCAAAGGCTAACATTAATGTGCGGGCTATAGCTCAAGGTTGTTCAGAGTACAATATTACTGTAGTTCTCAAGCGAGAAGATTGTGTAAGGGCCCTAAGAGCTGTCCACTCAAGATTTTATCTGTCAAGAACAACAATTGCAATGGGTATTATTGGACCTGGATTGATTGGCGCCACCTTACTTGACCAGCTTAGGGATCAGGTAGCGGTCCTCAAGGAAAAATTTAACATTGATTTGCGTGTCATGGGCATTACAGGATCAAGAACAATGCTTTTGAGTGATATGGGTATTGACTTAAGTAGATGGAGAGAAGTTCAAAAGGAAAAAGGAGAAAAGGCTGACCTGGAGAAATTTGTTCAACATGTACGAGGGAATCATTTTATCCCAAATACTGTTTTGGTCGACTGTACAGCAGATTCTAATGTTGCTACTCATTACTATGACTGGTTGCGTAGGGGTATTCATGTAATTACCCCTAACAAGAAGGCCAATTCAGGACCACTTGATCAGTATTTGAAGTTGAGAGCTCTTCAACGGAAATCCTATACGCACTACTTCTATGAAGCTACTGTTGGAGCTGGGCTCCCAATCATTACTACTTTAAAAGGTCTTCTTGAAACCGGGGACAAAATTTTGCGCGTTGAAGGCATCTTCAGTGGAACTCTGAGTTATATTTTCAACAACTTTAAAGGCACAAGATCTTTCAGTGAAGTGGTGAGAGAGGCAAAAGAGGCAGGTTACACTGAACCAGATCCAAGGGATGATTTGTCTGGAACAGACGTCGCCCGCAAGGTCATAATTCTTGCAAGAGAATGTGGATTGGAGCTGGAGCTATCAGATATTTCTGTTAAAAGCCTTGTGCCAGAACCATTACGGGCTAGTGCATCCGCCGAGGAATTTATGCAGAAACTTCCACAATTTGATCCAGACATGACTAAGGAGCGACAAGCTGCTGCGGATGCAGAAGAAGTGCTGAGGTACGTCGGGGTGGTGGACGTTGTTAACCAAAAAGGGGCTGTGGAATTGCGAAGGTACAAGAAAGATCATCCGTTTGCCCAACTTTCTGGGTCTGATAACATTATCGCTTTCACCACCGAAAGGTACAACAAACAACCTCTCATTGTCCGGGGGCCAGGTGCCGGGGCAGAAGTGACAGCTGGTGGAGTATTTAGTGACATTTTGCGGCTCGCATCTTATCTTGGTGCCCCATCATAG

Network for GWHGAAZE028634

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.29	AA_kinase	85	365	3.00E-43
PF01842.26	ACT	412	466	1.90E-09
PF13840.7	ACT_7	482	545	1.70E-08
PF03447.17	NAD_binding_3	560	696	1.50E-24
PF00742.20	Homoserine_dh	704	902	1.60E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12524	thrA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of amino acids	map01230
		Glycine, serine and threonine metabolism	map00260
		Cysteine and methionine metabolism	map00270
		Lysine biosynthesis	map00300
		Monobactam biosynthesis	map00261

Gene Ontology

GO term	Ontology	Name
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0008652	biological_process	cellular amino acid biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0050661	molecular_function	NADP binding
GO:0004072	molecular_function	aspartate kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.204
	SRR3591706	second leaf	22.510
	SRR3591707	mature leaf	10.383
	SRR3591708	Shoot apex	32.858
	SRR3591709	Stem	21.696
	SRR3591710	White floral bud	67.056
	SRR3591711	White flower	50.451
	SRR3591712	Green floral bud	89.874
	SRR3591713	Yellow flower	61.249
SRP173429	SRR8316895	Juvenile bud stage	63.807
	SRR8316896	Juvenile bud stage	89.129
	SRR8316897	Juvenile bud stage	59.822
	SRR8316894	Third green stage	38.265
	SRR8316900	Third green stage	161.644
	SRR8316901	Third green stage	116.916
	SRR8316898	Complete white stage	41.576
	SRR8316899	Complete white stage	139.863
	SRR8316903	Complete white stage	84.303
	SRR8316902	Silver flowering stage	21.364
	SRR8316904	Silver flowering stage	36.346
	SRR8316905	Silver flowering stage	13.887
	SRR8316906	Gold flowering stage	30.714
	SRR8316907	Gold flowering stage	36.482
	SRR8316908	Gold flowering stage	27.996
SRP132670	SRR6706286	Control	83.799
	SRR6706287	Light intensity 50%	95.818
	SRR6706288	Light intensity 20%	111.897
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.660
	CNS0095593	Slightly white alabastrum(diploid) 2	42.833
	CNS0095594	Slightly white alabastrum(diploid) 3	31.491
	CNS0095595	Whole white alabastrum(diploid) 2	40.422
	CNS0095596	Whole white alabastrum(diploid) 3	50.638
	CNS0095597	Whole white alabastrum(diploid) 4	31.030
	CNS0095598	Silvery flower (diploied) 1	33.416
	CNS0095599	Silvery flower (diploied) 2	35.032
	CNS0095600	Silvery flower (diploied) 3	101.337
	CNS0095601	Golden flower (diploid) 1	22.353
	CNS0095602	Golden flower (diploid) 2	54.641
	CNS0095603	Golden flower (diploid) 3	53.355
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.670
	CNS0095605	Slightly white alabastrum(tetraploid) 2	65.324
	CNS0095606	Slightly white alabastrum(tetraploid) 3	160.095
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.269
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.789
	CNS0095609	Whole white alabastrum(tetraploid) 3	169.276
	CNS0095610	Silvery flower (diploied) 1	101.729
	CNS0095611	Silvery flower (diploied) 2	103.441
	CNS0095612	Silvery flower (diploied) 3	37.816
	CNS0095613	Golden flower (tetraploid) 1	33.915
	CNS0095614	Golden flower (tetraploid) 2	76.755
	CNS0095615	Golden flower (tetraploid) 3	64.564
CRA001975	CRR073297	Stem 1	101.463
	CRR073298	Stem 2	82.247
	CRR073299	Stem 3	84.952
	CRR073300	Leaf 1	79.446
	CRR073301	Leaf 2	71.964
	CRR073302	Leaf 3	67.870
	CRR073303	Juvenile bud 1	83.718
	CRR073304	Juvenile bud 2	45.461
	CRR073305	Juvenile bud 3	91.180
	CRR073306	Third green 1	12.393
	CRR073307	Third green 2	10.676
	CRR073308	Third green 3	11.353
	CRR073309	Second white 1	12.406
	CRR073310	Second white 2	11.348
	CRR073311	Second white 3	10.609
	CRR073312	Silver flowering 1	10.213
	CRR073313	Silver flowering 2	9.425
	CRR073314	Silver flowering 3	8.258
	CRR073315	Gold flowering 1	6.283
	CRR073316	Gold flowering 2	8.283
	CRR073317	Gold flowering 3	6.110
	CRR073318	Tawny withering 1	15.160
	CRR073319	Tawny withering 2	9.967
	CRR073320	Tawny withering 3	16.873