Gene detail

Detail information of GWHGAAZE028641

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009602822.1	6.6043E-129	PREDICTED: vacuolar protein sorting-associated protein 26A [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FJD0\|VP26A_ARATH	5E-124	Vacuolar protein sorting-associated protein 26A
trEMBL	tr\|A0A067K695\|A0A067K695_JATCU	5E-129	Uncharacterized protein {ECO:0000313\|EMBL:KDP27329.1}
TAIR10	AT5G53530.1	9E-100	vacuolar protein sorting 26A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	62339582	62343951	+
GWHAAZE00000008	mRNA	62339582	62343951	+
GWHAAZE00000008	exon	62339582	62339584	+
GWHAAZE00000008	exon	62339807	62339881	+
GWHAAZE00000008	exon	62340098	62340170	+
GWHAAZE00000008	exon	62341222	62341266	+
GWHAAZE00000008	exon	62341366	62341477	+
GWHAAZE00000008	exon	62342456	62342565	+
GWHAAZE00000008	exon	62342976	62343038	+
GWHAAZE00000008	exon	62343238	62343319	+
GWHAAZE00000008	exon	62343708	62343951	+
GWHAAZE00000008	CDS	62339582	62339584	+
GWHAAZE00000008	CDS	62339807	62339881	+
GWHAAZE00000008	CDS	62340098	62340170	+
GWHAAZE00000008	CDS	62341222	62341266	+
GWHAAZE00000008	CDS	62341366	62341477	+
GWHAAZE00000008	CDS	62342456	62342565	+
GWHAAZE00000008	CDS	62342976	62343038	+
GWHAAZE00000008	CDS	62343238	62343319	+
GWHAAZE00000008	CDS	62343708	62343951	+

Transcript Sequence
>GWHTAAZE028675 ATGGTTCCATTGAAGAAGGAAAATGGTCAAACATCAATGGTGCGACTTTTCCAAAGTCAAGAAAACATTGCTGGCAAGATTTCCATTGAACCAGTTCAAGGAAAGAAAGTTGAACACAAGGGAATAAAAATTGAGCTCCTTGGTCAGATCGAAATGTACTTCGACAGAGGCAACTTCTATGACTTCACCTCTCTTGTTCGTGAACTTGATGTTCCTGGTAAAATATATGAAAGGAAAACATATCCATTTGAATTCTTGACAGTTGAAATGCCATATGAGACATACAATGGGGTGAATGTGCGACTAAGATACGTCCTGAAAGTGACAATCACTCGTGGCTTTGGTGGAAGCATCGTGGGATACCAAGACTTTGTGGTAATCTCTCTCTCACACACCCATACAACACACCTGTGTGTAGTCATTGAAGAACATCACTCCATGAAGGCTGTAAGCATGAAAGAGGCATTAGAACATAATTATGCAAGCCCTGATTTTGATGCTTCACAGATGGAAGTTGGAATTGAAGATTGTCTTCATATTGAGTTCAAGTACAATAAGAGCAAGTATCATCTGAAAGATGTAATCATAGGAAAGATATACTTTCTTCTTGTTAGAATCAAGATAAAAAATATGGATCTTGAGATCAGGAGACGAGAATCAACGGGTTCAGGGGCCAACACCCATGTTGAGACAGAGATGCTTGCGAAATTTGAGTTGATGGATGGTGCTCCAGTCAGAGGTATCTTCATAACAGCTATTCTGATCTCATTTGTTTTTCCAAATTACGTTATTCATTTATCCGGCTAA

Network for GWHGAAZE028641

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03643.16	Vps26	2	262	9.80E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18466	VPS26	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.709
	SRR3591706	second leaf	0.292
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.089
	SRR3591709	Stem	0.921
	SRR3591710	White floral bud	0.340
	SRR3591711	White flower	0.093
	SRR3591712	Green floral bud	0.650
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.164
	SRR8316897	Juvenile bud stage	0.126
	SRR8316894	Third green stage	0.084
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.025
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.176
	SRR8316904	Silver flowering stage	0.028
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.200
	SRR8316907	Gold flowering stage	0.126
	SRR8316908	Gold flowering stage	0.267
SRP132670	SRR6706286	Control	0.032
	SRR6706287	Light intensity 50%	0.020
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.055
	CNS0095593	Slightly white alabastrum(diploid) 2	0.136
	CNS0095594	Slightly white alabastrum(diploid) 3	0.694
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.042
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.142
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.094
	CNS0095602	Golden flower (diploid) 2	0.008
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.081
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.336
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.139
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.084
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.067
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.042
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.022
	CRR073298	Stem 2	0.079
	CRR073299	Stem 3	0.031
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.024
	CRR073306	Third green 1	0.005
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.688
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.001
	CRR073319	Tawny withering 2	0.076
	CRR073320	Tawny withering 3	0.000