Gene detail

Detail information of GWHGAAZE028894

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011036585.1	0	PREDICTED: probable sucrose-phosphate synthase 1 [Populus euphratica]
COG	YP_004511535.1	6E-130	sucrose-phosphate synthase
Swissprot	tr\|O22060\|SPSA1_CITUN	0	Probable sucrose-phosphate synthase 1
trEMBL	tr\|B9IKZ7\|B9IKZ7_POPTR	0	Sucrose-phosphate synthase family protein {ECO:0000313\|EMBL:EEF03439.1}
TAIR10	AT5G20280.1	0	sucrose phosphate synthase 1F

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	72287148	72297295	-
GWHAAZE00000008	mRNA	72287148	72297295	-
GWHAAZE00000008	exon	72297161	72297295	-
GWHAAZE00000008	exon	72295046	72295135	-
GWHAAZE00000008	exon	72294023	72294255	-
GWHAAZE00000008	exon	72293819	72293882	-
GWHAAZE00000008	exon	72292389	72293087	-
GWHAAZE00000008	exon	72292066	72292182	-
GWHAAZE00000008	exon	72291786	72291917	-
GWHAAZE00000008	exon	72291323	72291499	-
GWHAAZE00000008	exon	72290555	72290608	-
GWHAAZE00000008	exon	72290398	72290460	-
GWHAAZE00000008	exon	72289036	72289950	-
GWHAAZE00000008	exon	72288594	72288721	-
GWHAAZE00000008	exon	72287148	72287530	-
GWHAAZE00000008	CDS	72297161	72297295	-
GWHAAZE00000008	CDS	72295046	72295135	-
GWHAAZE00000008	CDS	72294023	72294255	-
GWHAAZE00000008	CDS	72293819	72293882	-
GWHAAZE00000008	CDS	72292389	72293087	-
GWHAAZE00000008	CDS	72292066	72292182	-
GWHAAZE00000008	CDS	72291786	72291917	-
GWHAAZE00000008	CDS	72291323	72291499	-
GWHAAZE00000008	CDS	72290555	72290608	-
GWHAAZE00000008	CDS	72290398	72290460	-
GWHAAZE00000008	CDS	72289036	72289950	-
GWHAAZE00000008	CDS	72288594	72288721	-
GWHAAZE00000008	CDS	72287257	72287530	-
GWHAAZE00000008	three_prime_UTR	72287148	72287256	-

Transcript Sequence
>GWHTAAZE028928 ATGGCGGGAAACGACTGGATAAACAGTTACCTAGAAGCGATCCTGGACGTTGATCCAGGATTGGACGATGCCAAATCGTCGCTGTTGTTGAGGGAGAGAGGCCGGTTCAGTCCGACTCGTTACTTCGTAGAAGAGGCTTCATCAATCCGGAATTCCGAGGAGAGGAATACAAGGTTGGAGAACATGTGCTGGAGGATTTGGAATTTGGCTCGTAGAAAGAAACGGAATGAAGGTGAAGAGCAACGTAAGTGCAAACAAAGGCAAGAACGTGAACATGCTAAGAAAGGGGTACTTGGTGATATGTTAGAAGACTTCTCAGAAGGAGAGAAAGGAGACATTCCAAGTGACATGTCACCTTATGGTGGTGAGAGCGCAAAGGGATCATCAAGAATGCGAAGGATCAGTTCTGTGGATGTGATGGAAAATTGGGCTAAACAACAACACAAGGAAAAGAAGTTCCTCCATGGCCTGATACGTGGTGAAGATATGGAGCTCGGTCGGGATTCTGATACTGGCGGTCAGGTCAAATATGTAGTAGAATTAGCGAGGGCTTTAGGAGCAATGCCTGGAGTTTATCGTGTTGATTTGCTTACAAGACAAGTATCAGCACCAGACGTACACTGGACTTATGGTGAACCAACAGAAATGCTAAACCCAGTGAACTCCGAAAATTCAATGCAAGGAAATGGGGAGAGTAGTGGTGCTTATATAATCCGTATACCATTTGGTCCAAAAGACAAATACATTCCAAAAGAACACCTTTGGCCACATATTTCTGAATTTGTTGATGGCGCACTTGGCCACATTATACAAATGTCTAAAGTTCTAGGTGAGCAAATCGGCAGTGGGCAACCCGTTTGGCCAGCCGCAATCCATGGACATTATGCAGATGCAGGGGCCTCTGCTGCTCTTTTGTCTGGGGCTTTAAATGCGCCAATGCTTTTTACCGGTCACTCCCTTGGACGAGATAAGCTCGAGCAAATTTTGAAACAAGGGCGACAATCTAGGGAAGAAATAAATAAGACTTATAGAATAATGAGGCGTATAGAAGCGGAAGAAATAACTCTTGATTCCTCCGAAGTAGTTATTACTAGCACTAAGCAGGAGATAGAAGAGCAATGGAATTTATATGATGGATTTGAACCAGTACTAGAGCGTAAACTAAGAGCAAGAATGAAAAGGAATGTGAGCTGCTATGGCAGGTTCATGCCTCGCATGATTGTAATTCCACCTGGAATGGAATTTCAACACATAGTTCCACATGATGGTGACATGGAAGGGGAAATAGAAGGAAATGAAGATGGTCCTTCAAATCCAGACCCACCTGTTTGGTCTGAGGTAATGAGATTCTTTGTGAATCCACGCAAGCCTATGATACTTGCCCTTGCAAGGCCGGACCCGAAAAAGAACATTACCACATTGGTTAAAGCATTTGGAGAATGTCGTCCATTGAGGGATCTTGCAAACCTTACATTAATAATGGGAAACCGTGATGCAATTGATGAAATGTCAGCAACAAATGCATCAGTTCTTATTTCAATTCTTAAGCTGATTGATAAGTATGATCTTTATGGGCATGTGGCATATCCTAAACACCACAAGCAGTCTGAAGTTCCTGATATATATCGTCTAGCAGCAAAATCAAAGGGTGTCTTCATTAATCCGGCTTTCATTGAGCCATTTGGTCTCACTTTGATTGAGGCGGCAGCTTATGGTCTGCCTATGGTTGCCACAAAAAATGGAGGTCCTGTTGACATTCACCGGGTTCTCGATAATGGTGTTCTAGTTGACCCTCATAATCAGCAAGCCGTTGCTGATGCACTATTGAAGCTTGTAGCTGATAGGCAACTTTGGGCAAGATGTAGGCAAAACGGGTTGAAAAATATTCACCTCTACTCATGGCCAGAGCATTGTAAGACATACTTAGCTCGAATAGCTTGTTGTAAACCCAGGCATCCACAATGGCATAAAAGCGAGGACACATACGAAAGCTCTGATTCAGATTCACCGGGCGATTCTTTAAGAGATATACAAGATTTATCATTAAACTTAAAGATCTCATTAGACGGTGAGAAAACTGAAGGGGGTGGTAGCTTTGATCATAACTTAGATTCTGAAGAAAAGAATATGGATGGAAAAAACCAAATAGAAAGTGCGGTTTTGGCTATGTCAAAGAGTGGGTCCATGGCGAAACAAGAACAAAATATCGCATCAAGTAAGTTTCCTTCATTGAGAAGGAGGAAGTTCATCTTTGTAATAGCTGTGGATTGCAATGAGAAATCAGATCTTTTAAGTATCATTAAAATGATTTTTGAGGCTGCTAGTATGGAGAAGGGTGACAAGGCATCAATAGGCTTCATTTTATCGACAGGTTTGAACATATCTGAGATAAAATCTATTCTACAGTCAGGTGGGTTGAATCAAATGGATTTTGATGCGTTTATATGCAATAATGGTAGTGAGGTGTACTATTCAAGTAGTGAGGAGAGTTCTTCTTTGGTAGCCGATTCGGATTATTGGCTGCATATAGATTATCGTTGGGGCGGAGAAGGTTTAAGGAGAACTTTGGTTCGTTGGGCGTCTTCTATGAATGAGAAAAATAGAAATGGACAAGTCATTGTTGAAGAAATGTCTGGCTCTAGACATTGCTATGCATTTCAAGTTAAAAATCCAGAAGTGCTTCCCCCAGTTAAGGAACTTCGAAAATTAATGAGAATTCAGGGTCTTCGATGCAGCATAGTGTATAGTCAAAATGGTACTAAGCTTAATGTGATTCCGGTGCTGGCTTCTCGATCGCAAGCCCTAAGGTACCTCTATGTCCGATGGGGCACAGACATGTCGAAATTCGTGGTACTAACAGGAGAATGTGGGGACACAGATTACGAAGGAATGCTCGGGGGAGTACATAAAACAGTTCTACTTAAGGGAGTTTGCTACGAAGCTCGTAAACTTCATACTAACAGAAGCTATCCACTAGAACATGTTGTACCATCCGATAGTCCCTTAGTTGTCGAGTGTGAAGGGTGCAAGAGTAATGATATCAATGCGTCACTTAAAAAACTCGGCATTTTTAAGTGCTAGGAATCTGTATACAGGAGATCCTATCTCCTTCATGGGTACTTTTAGTTGTTATTGTAATAATGTTGGTTCATCTAATTTCTACCTTAAAATCCATTCTCTTGGCTATATA

Network for GWHGAAZE028894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00862.20	Sucrose_synth	155	416	3.80E-07
PF00534.21	Glycos_transf_1	453	627	1.80E-25
PF05116.14	S6PP	777	959	4.50E-16

Protein Sequence

>GWHPAAZE028912
MAGNDWINSYLEAILDVDPGLDDAKSSLLLRERGRFSPTRYFVEEASSIRNSEERNTRLENMCWRIWNLARRKKRNEGEEQRKCKQRQEREHAKKGVLGDMLEDFSEGEKGDIPSDMSPYGGESAKGSSRMRRISSVDVMENWAKQQHKEKKFLHGLIRGEDMELGRDSDTGGQVKYVVELARALGAMPGVYRVDLLTRQVSAPDVHWTYGEPTEMLNPVNSENSMQGNGESSGAYIIRIPFGPKDKYIPKEHLWPHISEFVDGALGHIIQMSKVLGEQIGSGQPVWPAAIHGHYADAGASAALLSGALNAPMLFTGHSLGRDKLEQILKQGRQSREEINKTYRIMRRIEAEEITLDSSEVVITSTKQEIEEQWNLYDGFEPVLERKLRARMKRNVSCYGRFMPRMIVIPPGMEFQHIVPHDGDMEGEIEGNEDGPSNPDPPVWSEVMRFFVNPRKPMILALARPDPKKNITTLVKAFGECRPLRDLANLTLIMGNRDAIDEMSATNASVLISILKLIDKYDLYGHVAYPKHHKQSEVPDIYRLAAKSKGVFINPAFIEPFGLTLIEAAAYGLPMVATKNGGPVDIHRVLDNGVLVDPHNQQAVADALLKLVADRQLWARCRQNGLKNIHLYSWPEHCKTYLARIACCKPRHPQWHKSEDTYESSDSDSPGDSLRDIQDLSLNLKISLDGEKTEGGGSFDHNLDSEEKNMDGKNQIESAVLAMSKSGSMAKQEQNIASSKFPSLRRRKFIFVIAVDCNEKSDLLSIIKMIFEAASMEKGDKASIGFILSTGLNISEIKSILQSGGLNQMDFDAFICNNGSEVYYSSSEESSSLVADSDYWLHIDYRWGGEGLRRTLVRWASSMNEKNRNGQVIVEEMSGSRHCYAFQVKNPEVLPPVKELRKLMRIQGLRCSIVYSQNGTKLNVIPVLASRSQALRYLYVRWGTDMSKFVVLTGECGDTDYEGMLGGVHKTVLLKGVCYEARKLHTNRSYPLEHVVPSDSPLVVECEGCKSNDINASLKKLGIFKC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00696	E2.4.1.14	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005985	biological_process	sucrose metabolic process
GO:0046524	molecular_function	sucrose-phosphate synthase activity
GO:0016157	molecular_function	sucrose synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.119
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.070
	SRR3591709	Stem	0.208
	SRR3591710	White floral bud	5.302
	SRR3591711	White flower	0.281
	SRR3591712	Green floral bud	38.893
	SRR3591713	Yellow flower	0.116
SRP173429	SRR8316895	Juvenile bud stage	6.481
	SRR8316896	Juvenile bud stage	26.797
	SRR8316897	Juvenile bud stage	15.727
	SRR8316894	Third green stage	12.423
	SRR8316900	Third green stage	42.432
	SRR8316901	Third green stage	40.859
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.130
	SRR8316903	Complete white stage	0.023
	SRR8316902	Silver flowering stage	0.023
	SRR8316904	Silver flowering stage	0.129
	SRR8316905	Silver flowering stage	0.039
	SRR8316906	Gold flowering stage	0.025
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	18.775
	SRR6706287	Light intensity 50%	17.258
	SRR6706288	Light intensity 20%	15.042
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.808
	CNS0095593	Slightly white alabastrum(diploid) 2	13.064
	CNS0095594	Slightly white alabastrum(diploid) 3	23.451
	CNS0095595	Whole white alabastrum(diploid) 2	27.653
	CNS0095596	Whole white alabastrum(diploid) 3	35.659
	CNS0095597	Whole white alabastrum(diploid) 4	29.171
	CNS0095598	Silvery flower (diploied) 1	0.080
	CNS0095599	Silvery flower (diploied) 2	0.361
	CNS0095600	Silvery flower (diploied) 3	0.045
	CNS0095601	Golden flower (diploid) 1	0.217
	CNS0095602	Golden flower (diploid) 2	0.070
	CNS0095603	Golden flower (diploid) 3	0.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.314
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.172
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.068
	CNS0095607	Whole white alabastrum(tetraploid) 1	58.531
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.594
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.636
	CNS0095610	Silvery flower (diploied) 1	0.058
	CNS0095611	Silvery flower (diploied) 2	0.282
	CNS0095612	Silvery flower (diploied) 3	1.149
	CNS0095613	Golden flower (tetraploid) 1	0.142
	CNS0095614	Golden flower (tetraploid) 2	0.057
	CNS0095615	Golden flower (tetraploid) 3	0.449
CRA001975	CRR073297	Stem 1	7.624
	CRR073298	Stem 2	9.572
	CRR073299	Stem 3	5.076
	CRR073300	Leaf 1	13.971
	CRR073301	Leaf 2	15.169
	CRR073302	Leaf 3	8.957
	CRR073303	Juvenile bud 1	10.817
	CRR073304	Juvenile bud 2	7.029
	CRR073305	Juvenile bud 3	0.141
	CRR073306	Third green 1	0.748
	CRR073307	Third green 2	0.832
	CRR073308	Third green 3	0.329
	CRR073309	Second white 1	0.101
	CRR073310	Second white 2	0.218
	CRR073311	Second white 3	0.072
	CRR073312	Silver flowering 1	0.658
	CRR073313	Silver flowering 2	1.135
	CRR073314	Silver flowering 3	0.113
	CRR073315	Gold flowering 1	0.924
	CRR073316	Gold flowering 2	0.088
	CRR073317	Gold flowering 3	0.136
	CRR073318	Tawny withering 1	0.431
	CRR073319	Tawny withering 2	0.480
	CRR073320	Tawny withering 3	0.511