Gene detail

Detail information of GWHGAAZE029159

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099164.1	2.2954E-172	PREDICTED: putative receptor-like protein kinase At5g39000 [Sesamum indicum]
COG	YP_001958461.1	2E-24	hypothetical protein Aasi_1443
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	1E-103	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068TV56\|A0A068TV56_COFCA	2E-160	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99859.1}
TAIR10	AT3G51550.1	1E-93	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8867943	8871861	-
GWHAAZE00000009	mRNA	8867943	8871861	-
GWHAAZE00000009	exon	8870442	8871861	-
GWHAAZE00000009	exon	8869792	8869910	-
GWHAAZE00000009	exon	8868863	8869176	-
GWHAAZE00000009	exon	8868613	8868742	-
GWHAAZE00000009	exon	8868250	8868498	-
GWHAAZE00000009	exon	8867943	8868020	-
GWHAAZE00000009	CDS	8870442	8871861	-
GWHAAZE00000009	CDS	8869792	8869910	-
GWHAAZE00000009	CDS	8868863	8869176	-
GWHAAZE00000009	CDS	8868613	8868742	-
GWHAAZE00000009	CDS	8868250	8868498	-
GWHAAZE00000009	CDS	8867943	8868020	-

Transcript Sequence
>GWHTAAZE029193 ATGGGCTTCCATTTTGGCCTTGTCAACATGATTGCAACTGCAGTGATAATTATAATCACTATTTTGAATGTCATTGTCTATAAACTTCGTGAACTTCACGAAGCAAACTTTGGCAAGAATTCGGACATTTCATCATCCCAACAAATAGCAGAAGCAAACTTTGGCGAGAATATAGAAGTATTAACCGCGCAACAACACCAGGAAGTGAACCTTGGCGAGGATTCAAGCATACCACCGTCGTTGAAATCAGAACAATTATGCCGTCACTTTTCGCTTGCTCATATCCTATTGGCCACCAACAACTTTGACGATGCATTAATCATTGGTCACGGTGGATTTGGGAAGGTGTACAAAGGGGTCATCGATGATGGGACAGTTACTGTTGCCATAAAGAGGTTAAGTCCTACGTCCAAACAAGGGGCACCCCAATTTTGGACAGAGGTGGAGTTGCTTTCTAAATTTCGGCACAGCCATCTTGTTTCACTAATTGGTTACTGTAACAATCGCGATGAGATGATACTTGTTTATGAGTACATGGCTAGTGGATCCCTCGCGGATCATCTGTACAAACTTGGTCCGAATGGTAATAATGCTCTAACCTTGTCCTGGGAGCAGCGCGTAAAGATTTGCATTGGGGCAGCACAGGGTTTGGATTACCTTCATACCGGTACGGGTATCCATGATAGGGTCATACATCGTGACTTGAAGAGTTCAAACATTCTATTGGATGATAGCTGGGCAGCTAAGGTATCAGATTTTGGGCTGTCTAAAATTGGCCCCGCAAATCAGTCCACCTCATCACATGTCAGTACCAACGTCAAAGGCACATTTGGGTATGTGGATCCTGAGTATTTGGTGACCCATAGACTCACTCGAAAGTCTGACGTTTACTCCTTTGGCGTTGTCTTGTTAGAAGTGTTGTCCGGGAGGCGGGCTGTAGATTTAAAACGTTGTGAGGAGCAGTGGGGTCTTGCTGGATGGGCCAAAGAATGCATAAAGAAAGGGGAACTAGATCAGATTATTGACCCAAATTTGAGATGGCAAATCTTGCCAAGTTCTTTGACAGCATTTGTGAAAATAGCGGATCAATGCCTGCATTATCGTTCGAAAAAACGCCCTACAATGGCTGAGGTGGTGGCCTCACTTGAGTCTACATTGGCATTGCAAGAGAGAAGAGATTCTTCAATGTTTGAGGCGGATTTTTTAAATTTAGGAGGGACTTTTGACAACCAAGAGAATCTGGATAATTCCTTACTAGAATCCGAGGTGAATAATGGTGGTGATGGTGAGCATCTGGGTGAAGAGATAGATAATTTTTTGTCATCTGGTGAGGCAAGCAATTTGCAGTCGCATGTAAGGCCTGCCAAAATGACACCGTTCAAAAGGATGGCGCGGCTGTTTTTCTTTGGGAAATCTCGAGCAAGTGAAATAAGCAACTTGGAATCCCTACAGTATGACTTTGGAACTCTTAAGGTTGCGACAAATAATTTCTCTGATGCTAACAAGCTTGGAAATGGTGCGTTTGGAGTTGTGTTCAAGTATATTACCATCTCTCAAAGCTTAGGTTATTTAAATGATGCTCTTACTAAGAAATTTTCTTTCGTTGGGTGTGCAGATCCAATCAAGCGTGCAACCTTGGATTGGGAACGGCGTTATAAAATCATAAGAGGTGTTGCTCGGGGGCTTCTTTATCTTCACGAAGATTCTCCTGTGCGGATTATTCATCGTCATGTCAAACCTAGCAACATTCTATTAGATACAGAGATGAGCCCGAAAATTTCTGATTTTTGCTTCGCAAAGTTGTGTAATCGGGAAGGAAGTGAAGGGTCTGTAACCAATCTTGTGGGGACTTATGGGTACATAGCACCAGAGTACTTAAGGGAAGGTTGCATCTCAGTTAAATCAGATGTGTTTGGCTTCGGCGTGTTGATTCTTCAAATCATAAGTGGTCCCGAGGAAAACCCAAAGTACCTTCCAAGCTATGCTCGGAGAAATTGGCGGGAAGGGACGTGTTCAAATCTGTTTGATCCACAACTGAGTGGTAGTCAAATTTCAGTGCATGAAGAGGAAATAATGAGATGTATACACATTGGATTGCTTTGCATCCAAGATTCTGCAACTGACAGGCCGACCATGGCTTCAATTGTACTCATGCTTAACAGCTCCTCTCTCGCTCTTCCAGAACTTTCAGAGCGTACTTCTTTTGTGCATGATAGATCTCTTCATACGACAGGTATCTACACGGCTAACTACCATAGTGGTGGGGATGTTCATGAGTGGAGGCGCAGCATTGGCAGCAGCTGGCGAATA

Network for GWHGAAZE029159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	108	382	4.70E-48
PF00069.26	Pkinase	545	652	2.10E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.477
	SRR3591706	second leaf	0.035
	SRR3591707	mature leaf	0.160
	SRR3591708	Shoot apex	0.101
	SRR3591709	Stem	0.488
	SRR3591710	White floral bud	0.136
	SRR3591711	White flower	0.216
	SRR3591712	Green floral bud	0.086
	SRR3591713	Yellow flower	0.061
SRP173429	SRR8316895	Juvenile bud stage	0.167
	SRR8316896	Juvenile bud stage	0.159
	SRR8316897	Juvenile bud stage	1.233
	SRR8316894	Third green stage	0.036
	SRR8316900	Third green stage	0.009
	SRR8316901	Third green stage	0.034
	SRR8316898	Complete white stage	0.082
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.033
	SRR8316902	Silver flowering stage	0.042
	SRR8316904	Silver flowering stage	0.066
	SRR8316905	Silver flowering stage	0.062
	SRR8316906	Gold flowering stage	0.138
	SRR8316907	Gold flowering stage	0.149
	SRR8316908	Gold flowering stage	0.737
SRP132670	SRR6706286	Control	0.226
	SRR6706287	Light intensity 50%	0.254
	SRR6706288	Light intensity 20%	0.080
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.174
	CNS0095593	Slightly white alabastrum(diploid) 2	0.119
	CNS0095594	Slightly white alabastrum(diploid) 3	0.096
	CNS0095595	Whole white alabastrum(diploid) 2	0.041
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.029
	CNS0095600	Silvery flower (diploied) 3	0.080
	CNS0095601	Golden flower (diploid) 1	0.137
	CNS0095602	Golden flower (diploid) 2	0.245
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.092
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.071
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.022
	CNS0095610	Silvery flower (diploied) 1	0.257
	CNS0095611	Silvery flower (diploied) 2	0.052
	CNS0095612	Silvery flower (diploied) 3	0.074
	CNS0095613	Golden flower (tetraploid) 1	0.125
	CNS0095614	Golden flower (tetraploid) 2	0.233
	CNS0095615	Golden flower (tetraploid) 3	0.122
CRA001975	CRR073297	Stem 1	0.116
	CRR073298	Stem 2	0.059
	CRR073299	Stem 3	0.023
	CRR073300	Leaf 1	0.070
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.070
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.046
	CRR073306	Third green 1	0.120
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.057
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.022
	CRR073313	Silver flowering 2	0.076
	CRR073314	Silver flowering 3	0.092
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.068
	CRR073317	Gold flowering 3	0.018
	CRR073318	Tawny withering 1	0.671
	CRR073319	Tawny withering 2	0.611
	CRR073320	Tawny withering 3	0.009