Gene detail

Detail information of GWHGAAZE029198

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010273536.1	0	PREDICTED: putative protease Do-like 14 [Nelumbo nucifera]
COG	YP_007124401.1	3E-65	trypsin-like serine protease with C-terminal PDZ domain
Swissprot	tr\|Q3E6S8\|DGP14_ARATH	4E-171	Putative protease Do-like 14
trEMBL	tr\|A0A067JKY4\|A0A067JKY4_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP23488.1}
TAIR10	AT5G27660.1	2E-123	Trypsin family protein with PDZ domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	11911577	11926440	+
GWHAAZE00000009	mRNA	11911577	11926440	+
GWHAAZE00000009	exon	11911577	11911676	+
GWHAAZE00000009	exon	11913393	11913572	+
GWHAAZE00000009	exon	11914109	11914236	+
GWHAAZE00000009	exon	11916835	11917046	+
GWHAAZE00000009	exon	11917269	11917350	+
GWHAAZE00000009	exon	11918234	11918376	+
GWHAAZE00000009	exon	11925429	11925549	+
GWHAAZE00000009	exon	11926339	11926440	+
GWHAAZE00000009	CDS	11911577	11911676	+
GWHAAZE00000009	CDS	11913393	11913572	+
GWHAAZE00000009	CDS	11914109	11914236	+
GWHAAZE00000009	CDS	11916835	11917046	+
GWHAAZE00000009	CDS	11917269	11917350	+
GWHAAZE00000009	CDS	11918234	11918376	+
GWHAAZE00000009	CDS	11925429	11925549	+
GWHAAZE00000009	CDS	11926339	11926440	+

Transcript Sequence
>GWHTAAZE029232 AGGAAATTCGCAATCTCCAACAAAAATTCGGTAATTCGTGTAATAGCTTTGGCTACTGCCGGATCAGGACTTTTGTATTCCAACTCTGGTTCAGATTCTGGAGACCTATCATCATTTCTTTATAGAACTGGCTCAGTTCCCTCGAATGATATAAAGAAAGAAGCTTCAGGAGAGGTTGGAAATGGTCCAAAACCTTGTTGTGGATGTTTGGGCAGAGATACTATTGCCAATGCGGCTGCTAGTGTGGGCCCTGCCGTTGTCAATTTATCGGTACCACAGGGTTTCTCTGGGTTAACTCTAGGAAAAAGCATAGGCTCTGGAACTATCATAGGTACAGATGGTACTATATTGACTTGTGCTCATGTGGTGGTTGATTTTCAAGGCTGGAATGCTACCTCCAAAGGAAAGGTTGATGTGACACTGCAAGATGGTCGGATTTTTGAGGGCACAGTGGTGAATGCTGATTTACATTCTGACATTGCTATTGTGAAAATCAGTTCTAAAACTCCTCTTCCAACAGCAAAATTGGGCTCTTCGAGTAAGCTCCGTCCTGGGGACTGGGTAGTGGCTTTGGGATGTCCCCTTTCTCTTCAAAATACGATAACAGCTGGTATTGTAAGTTGTGTGGATCGTAAAAGTAGTGATCTAGGGCTTGGAGGAATGCGAAGAGAGTATTTGCAAACAGATTGTGCAATCAACGCGGGTAATTCTGGTGGACCCCTTGTCAATATTGATGGAGAAATTGTTGGCATTAATATAATCAAAGTATTGGGAGCTGATGGGTTAAGCTTTGCTGTACCAATTGACTCGGTTTCCAAAATCATAGAGCACTTCAAAACAAACGGGAGAGTTGTTCGACCTTGGCTAGGTTTGAAAATGATTGATCTTAATGATATGATTGTTGCTCAGCTTAAGGAAAAAGATTCGACATTTCCCACTGTCAGCAAAGGTGTTCTTGTACCAATGGTAACCCCAGGATCTCCTGCTGAGCGTGCTGGATTTAATCCAGGGGATGTCGTCGTTGAATTTGAGGGAAGACCTGTTGGGAGCATCAAGGAGGTATTATGA

Network for GWHGAAZE029198

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13365.7	Trypsin_2	105	251	1.70E-32
PF17820.2	PDZ_6	323	354	4.20E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08669	HTRA2, PRSS25	Apoptosis	map04210
		Apoptosis - fly	map04214
		Apoptosis - multiple species	map04215

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004252	molecular_function	serine-type endopeptidase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.150
	SRR3591706	second leaf	4.209
	SRR3591707	mature leaf	4.241
	SRR3591708	Shoot apex	9.852
	SRR3591709	Stem	8.413
	SRR3591710	White floral bud	11.892
	SRR3591711	White flower	22.414
	SRR3591712	Green floral bud	19.360
	SRR3591713	Yellow flower	16.639
SRP173429	SRR8316895	Juvenile bud stage	18.135
	SRR8316896	Juvenile bud stage	25.896
	SRR8316897	Juvenile bud stage	15.773
	SRR8316894	Third green stage	10.758
	SRR8316900	Third green stage	22.153
	SRR8316901	Third green stage	19.821
	SRR8316898	Complete white stage	10.248
	SRR8316899	Complete white stage	23.112
	SRR8316903	Complete white stage	14.828
	SRR8316902	Silver flowering stage	11.322
	SRR8316904	Silver flowering stage	14.134
	SRR8316905	Silver flowering stage	7.061
	SRR8316906	Gold flowering stage	25.809
	SRR8316907	Gold flowering stage	23.881
	SRR8316908	Gold flowering stage	32.502
SRP132670	SRR6706286	Control	20.589
	SRR6706287	Light intensity 50%	21.809
	SRR6706288	Light intensity 20%	23.681
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.254
	CNS0095593	Slightly white alabastrum(diploid) 2	14.314
	CNS0095594	Slightly white alabastrum(diploid) 3	13.795
	CNS0095595	Whole white alabastrum(diploid) 2	11.731
	CNS0095596	Whole white alabastrum(diploid) 3	11.249
	CNS0095597	Whole white alabastrum(diploid) 4	10.857
	CNS0095598	Silvery flower (diploied) 1	17.546
	CNS0095599	Silvery flower (diploied) 2	12.450
	CNS0095600	Silvery flower (diploied) 3	15.926
	CNS0095601	Golden flower (diploid) 1	12.282
	CNS0095602	Golden flower (diploid) 2	13.896
	CNS0095603	Golden flower (diploid) 3	13.508
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.279
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.497
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.185
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.425
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.390
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.872
	CNS0095610	Silvery flower (diploied) 1	21.747
	CNS0095611	Silvery flower (diploied) 2	19.313
	CNS0095612	Silvery flower (diploied) 3	18.341
	CNS0095613	Golden flower (tetraploid) 1	13.209
	CNS0095614	Golden flower (tetraploid) 2	18.123
	CNS0095615	Golden flower (tetraploid) 3	16.252
CRA001975	CRR073297	Stem 1	25.015
	CRR073298	Stem 2	20.997
	CRR073299	Stem 3	16.617
	CRR073300	Leaf 1	23.615
	CRR073301	Leaf 2	22.521
	CRR073302	Leaf 3	17.432
	CRR073303	Juvenile bud 1	17.438
	CRR073304	Juvenile bud 2	12.798
	CRR073305	Juvenile bud 3	18.730
	CRR073306	Third green 1	3.984
	CRR073307	Third green 2	2.851
	CRR073308	Third green 3	4.591
	CRR073309	Second white 1	4.002
	CRR073310	Second white 2	7.857
	CRR073311	Second white 3	6.905
	CRR073312	Silver flowering 1	2.765
	CRR073313	Silver flowering 2	4.147
	CRR073314	Silver flowering 3	2.787
	CRR073315	Gold flowering 1	10.261
	CRR073316	Gold flowering 2	14.826
	CRR073317	Gold flowering 3	6.801
	CRR073318	Tawny withering 1	13.621
	CRR073319	Tawny withering 2	12.148
	CRR073320	Tawny withering 3	18.917