Gene detail

Detail information of GWHGAAZE029352

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010259460.1	4.84043E-76	PREDICTED: phospholipase D p1 [Nelumbo nucifera]
Swissprot	tr\|Q9LRZ5\|PLDP1_ARATH	2E-61	Phospholipase D p1
trEMBL	tr\|W9SAS8\|W9SAS8_9ROSA	8E-73	Phospholipase D p1 {ECO:0000313\|EMBL:EXC23290.1}
TAIR10	AT3G16785.1	9E-56	phospholipase D P1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	20083058	20094175	+
GWHAAZE00000009	mRNA	20083058	20094175	+
GWHAAZE00000009	exon	20083058	20083260	+
GWHAAZE00000009	exon	20087294	20087435	+
GWHAAZE00000009	exon	20089015	20089185	+
GWHAAZE00000009	exon	20090085	20090255	+
GWHAAZE00000009	exon	20091870	20091935	+
GWHAAZE00000009	exon	20093454	20093515	+
GWHAAZE00000009	exon	20093668	20093809	+
GWHAAZE00000009	exon	20094080	20094175	+
GWHAAZE00000009	CDS	20083058	20083260	+
GWHAAZE00000009	CDS	20087294	20087435	+
GWHAAZE00000009	CDS	20089015	20089185	+
GWHAAZE00000009	CDS	20090085	20090255	+
GWHAAZE00000009	CDS	20091870	20091935	+
GWHAAZE00000009	CDS	20093454	20093515	+
GWHAAZE00000009	CDS	20093668	20093809	+
GWHAAZE00000009	CDS	20094080	20094175	+

Transcript Sequence
>GWHTAAZE029386 ATGTCGTCGGAGCATCTTCTCTCCGGCGGCAATTCGAAGTATTCTCCGATCAAGAAGGAAGCAGAGGCATTGCCGCTGGAGATGTCGTCACCGAGCTCGTTCCTATGCGGTTGCGAGCGAACGGTGATCTTCGATGAATTGCCTCCGATCAAGAAGGAAGCAGAGGCAATGCCGCCGGAGATGATGTCACCGAGCTCGTTCCGATATGTACCATCAAGGGCTGCTCTCCCAATTATTCGCCCAGCACTTGGCAATCAGCAAACAATTTCAGACAAAGCTAAAGTTGCAATGCAAGGGTATCTTAATCACTTTCTTGGAGACATTGATATTGTAAATTCTCGAGAGGTCTGCAAGTTTTTGGAGGTCTCTAGATTATCATTTTCACACGACTACGGCCCAAAGTTGAAAGAAGGTTATGTAATGGTTAAGCATCTACCAAATATTCCAAAGGATGATGCTGGTGCAAGTTGTTGTGTGTTTTCATGGTCTGGTTGTTGTAACAACAATTGGCAAAAGGTTTGGGGAGTCTTGAAACCTGGGTTCTTGGCCTTACTGGAAGACCCTTTCGGAACTAAACTCTTAGATATAATTGTTTTTGATTTGCTACCTTCAAATGGAAACGAAAAGGGTGGAGTATATTTGGCAAATGAGAGAAATGAACGTAATCCATTGCGATATGCATTTCAGATAAGTCGGATCAGAGACCCTGTAGCTGACAGTACATACAAGGATCTTTGGATGGCAACTGCAAGGGAAAATGCTACAGTCTTCCTAGATGTTTTCTCTTGCATCCCGAATGACCTTATACACTCCAGATCTGCACTTAGACAAAGTATCGGTCACTGGAAAGAGAAACTCAGGCACACCACAATCGACCTAGGCGTAGCTCCCGAGAAACTCAAGTTGTGTAAAGATGGAGAAATTACAGTCACCGGTCCAATGGGGTACCTAAAGTCGATTCATGAAGGCATCCATTTCGGTATTTTCCGTTTCCATGATTCTTACAGCAATTACTGTTTCGCGGTGTTCGCCAAACTAACTATTGTGAGTTAA

Network for GWHGAAZE029352

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.068
	SRR3591709	Stem	0.313
	SRR3591710	White floral bud	0.063
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.019
	SRR3591713	Yellow flower	0.542
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.008
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.112
	SRR8316901	Third green stage	0.015
	SRR8316898	Complete white stage	0.045
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.012
	SRR8316904	Silver flowering stage	0.045
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.010
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.003
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.025
	CNS0095594	Slightly white alabastrum(diploid) 3	0.006
	CNS0095595	Whole white alabastrum(diploid) 2	0.018
	CNS0095596	Whole white alabastrum(diploid) 3	0.006
	CNS0095597	Whole white alabastrum(diploid) 4	0.014
	CNS0095598	Silvery flower (diploied) 1	0.007
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.011
	CNS0095601	Golden flower (diploid) 1	0.032
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.014
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.026
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.025
	CNS0095610	Silvery flower (diploied) 1	0.019
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.010
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.016
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.083
	CRR073301	Leaf 2	0.016
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.020
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.008
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.004
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.082
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.024
	CRR073320	Tawny withering 3	0.000