Detail information of GWHGAAZE029493


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006431373.12.1404E-178hypothetical protein CICLE_v10000176mg [Citrus clementina]
COGYP_004775215.12E-39RHS repeat-associated core domain-containing protein
Swissprottr|Q9LT96|Y5977_ARATH1E-121Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBLtr|I1KNP6|I1KNP6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G40100.1}
TAIR10AT1G79620.11E-104Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2414337724148864-
GWHAAZE00000009mRNA2414337724148864-
GWHAAZE00000009exon2414337724143619-
GWHAAZE00000009exon2414394824144084-
GWHAAZE00000009exon2414416824144370-
GWHAAZE00000009exon2414469624144893-
GWHAAZE00000009exon2414554224145676-
GWHAAZE00000009exon2414581524145886-
GWHAAZE00000009exon2414614524146213-
GWHAAZE00000009exon2414630524146376-
GWHAAZE00000009exon2414647524146546-
GWHAAZE00000009exon2414678524146859-
GWHAAZE00000009exon2414695524147116-
GWHAAZE00000009exon2414780224147873-
GWHAAZE00000009exon2414795724148031-
GWHAAZE00000009exon2414836924148440-
GWHAAZE00000009exon2414864724148767-
GWHAAZE00000009exon2414886124148864-
GWHAAZE00000009CDS2414886124148864-
GWHAAZE00000009CDS2414864724148767-
GWHAAZE00000009CDS2414836924148440-
GWHAAZE00000009CDS2414795724148031-
GWHAAZE00000009CDS2414780224147873-
GWHAAZE00000009CDS2414695524147116-
GWHAAZE00000009CDS2414678524146859-
GWHAAZE00000009CDS2414647524146546-
GWHAAZE00000009CDS2414630524146376-
GWHAAZE00000009CDS2414614524146213-
GWHAAZE00000009CDS2414581524145886-
GWHAAZE00000009CDS2414554224145676-
GWHAAZE00000009CDS2414469624144893-
GWHAAZE00000009CDS2414416824144370-
GWHAAZE00000009CDS2414394824144084-
GWHAAZE00000009CDS2414337724143619-
Transcript Sequence

Network for GWHGAAZE029493

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13855.7LRR_8871462.50E-06
PF07714.18PK_Tyr_Ser-Thr5035866.10E-14
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-VIII-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding
GO:0004672molecular_functionprotein kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.173
SRR3591706second leaf12.307
SRR3591707mature leaf2.391
SRR3591708Shoot apex18.203
SRR3591709Stem5.524
SRR3591710White floral bud9.193
SRR3591711White flower4.120
SRR3591712Green floral bud10.616
SRR3591713Yellow flower0.428
SRP173429 SRR8316895Juvenile bud stage 5.557
SRR8316896Juvenile bud stage 7.009
SRR8316897Juvenile bud stage 2.268
SRR8316894Third green stage 2.607
SRR8316900Third green stage 4.944
SRR8316901Third green stage 6.466
SRR8316898Complete white stage 1.212
SRR8316899Complete white stage 4.774
SRR8316903Complete white stage 2.832
SRR8316902Silver flowering stage0.369
SRR8316904Silver flowering stage0.582
SRR8316905Silver flowering stage0.117
SRR8316906Gold flowering stage 0.518
SRR8316907Gold flowering stage 0.880
SRR8316908Gold flowering stage 0.407
SRP132670SRR6706286Control5.245
SRR6706287Light intensity 50%5.632
SRR6706288Light intensity 20%6.037
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.233
CNS0095593Slightly white alabastrum(diploid) 21.175
CNS0095594Slightly white alabastrum(diploid) 33.037
CNS0095595Whole white alabastrum(diploid) 20.867
CNS0095596Whole white alabastrum(diploid) 30.638
CNS0095597Whole white alabastrum(diploid) 41.473
CNS0095598Silvery flower (diploied) 13.844
CNS0095599Silvery flower (diploied) 22.105
CNS0095600Silvery flower (diploied) 31.284
CNS0095601Golden flower (diploid) 11.911
CNS0095602Golden flower (diploid) 21.355
CNS0095603Golden flower (diploid) 31.258
CNS0095604Slightly white alabastrum(tetraploid) 12.652
CNS0095605Slightly white alabastrum(tetraploid) 21.746
CNS0095606Slightly white alabastrum(tetraploid) 39.755
CNS0095607Whole white alabastrum(tetraploid) 12.209
CNS0095608Whole white alabastrum(tetraploid) 20.534
CNS0095609Whole white alabastrum(tetraploid) 34.384
CNS0095610Silvery flower (diploied) 11.186
CNS0095611Silvery flower (diploied) 20.796
CNS0095612Silvery flower (diploied) 30.466
CNS0095613Golden flower (tetraploid) 10.283
CNS0095614Golden flower (tetraploid) 20.311
CNS0095615Golden flower (tetraploid) 30.384
CRA001975CRR073297Stem 16.404
CRR073298Stem 25.230
CRR073299Stem 33.451
CRR073300Leaf 15.371
CRR073301Leaf 24.564
CRR073302Leaf 32.685
CRR073303Juvenile bud 11.674
CRR073304Juvenile bud 22.509
CRR073305Juvenile bud 32.582
CRR073306Third green 10.489
CRR073307Third green 20.033
CRR073308Third green 30.221
CRR073309Second white 10.092
CRR073310Second white 20.253
CRR073311Second white 30.029
CRR073312Silver flowering 10.416
CRR073313Silver flowering 20.255
CRR073314Silver flowering 31.340
CRR073315Gold flowering 10.598
CRR073316Gold flowering 20.622
CRR073317Gold flowering 30.529
CRR073318Tawny withering 10.570
CRR073319Tawny withering 20.666
CRR073320Tawny withering 30.562