Gene detail

Detail information of GWHGAAZE029496

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011028448.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X2 [Populus euphratica]
COG	YP_001192956.1	2E-27	two component regulator
Swissprot	tr\|Q9LT96\|Y5977_ARATH	1E-148	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|A0A059BA58\|A0A059BA58_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW62550.1}
TAIR10	AT5G49760.1	4E-132	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	24286085	24296427	+
GWHAAZE00000009	mRNA	24286085	24296427	+
GWHAAZE00000009	exon	24286085	24286173	+
GWHAAZE00000009	exon	24286500	24286574	+
GWHAAZE00000009	exon	24287390	24287551	+
GWHAAZE00000009	exon	24287647	24287721	+
GWHAAZE00000009	exon	24288272	24288343	+
GWHAAZE00000009	exon	24288443	24288514	+
GWHAAZE00000009	exon	24289134	24289268	+
GWHAAZE00000009	exon	24289920	24290401	+
GWHAAZE00000009	exon	24290749	24290910	+
GWHAAZE00000009	exon	24295722	24295858	+
GWHAAZE00000009	exon	24296188	24296427	+
GWHAAZE00000009	CDS	24286085	24286173	+
GWHAAZE00000009	CDS	24286500	24286574	+
GWHAAZE00000009	CDS	24287390	24287551	+
GWHAAZE00000009	CDS	24287647	24287721	+
GWHAAZE00000009	CDS	24288272	24288343	+
GWHAAZE00000009	CDS	24288443	24288514	+
GWHAAZE00000009	CDS	24289134	24289268	+
GWHAAZE00000009	CDS	24289920	24290401	+
GWHAAZE00000009	CDS	24290749	24290910	+
GWHAAZE00000009	CDS	24295722	24295858	+
GWHAAZE00000009	CDS	24296188	24296427	+

Transcript Sequence
>GWHTAAZE029530 ATGACATTCAACTCCAGAACATTATCAAGCTTGAGTTTGACTGGTACACTATCCGGAGACATCGAGAATTTATCTGAATTGCAGACTCTGGATCTGTCATACAATAAAGGTTTGACTGGATCTATTCCTCCATCAATTGGAAATTTGAGGAAGTTATCAAACTTGTCTCTAAATAGTAATGGCCTCAGTGGACCAATACCGCCTTCAATTGGTAATCTAAATAATCTTTATTGGTTGGATTTGGCCGATAATAAGCTTAGCGGACCAATACCAGTTTCTAATGGAATCAGGCCAGGACTTGATATGCTGGTTAAAACAAAGCACTTTCATTTTGGAAATAATCGGCTTTCTGGTGAGATCCCAGGTCGGCTCTTCAGCTCGTCTTTGAAGTTGATACATCTGCTTTTAGAAAACAACCAGCTCACCGGCAGCATCCCTTCGACACTGGGACTAGTCAAGACCTTGGAGGTCGTTCGACTCGATAGGAATTCGTTTACTGGACCTGTTCCATCAAACATCAACAACCTTAGCAGTGTCAGTGATCTTGTATTGAGAAATAACCAGCTTAATGGCATCTTGGATATTGGGTCCACCTATAGCAACCAACTTCAAGAGGTTGACTTGCAGAATAATCTCATCAGTGGCTTCACAGAAAGGGTGGGATACCATATTGGGTTAAAACTTGCTGGTAACCCTGTTTGTGAGGAAAGAGTAGTAGACAAAAAATACTGTAATGTTACTCAACGGCCTAATGGCTGGTATTCGACATTACCAAGAAATTGTGTGCCTAGTACCTGCAGCTCAGAGCAAATTTCGAGCCCAAATTGTCAATGTGCATATCCGTACACAGGGAAATTATCATTTAGAGCTCGTAAGTTTTCCAGCCTGGGAAATTCGAGTATTTACATTTCTCTTCAAGAATCTATGATGGTTTCTTTTCAGTCCCATCGACTCCCAGTGGATTCGGTCTCTCTGAAGAATCCGACGACAGATCCTGACGATTACCTTGTAATAAGCCTTGAAATTTTTCCATTCGGCCAAGATTATTTCAATCGAACAGGAGTTAGTGCGATTGGATTTGTGCTTAGCAACCAAACTTTTAAGCCTCCCTCAGATTTTGGACCTTTTTTTTTCATCGGTGACGGCTATCAGTACTTTTCAGGTCCTAGAACAGCACACAAGTCATCATCAAATACTGGCATTATCATTGGAGCTGCTGCTGCTGTTGGTGCTGGCCTTTTGCTATTACTATTCCTTGCAGGATTTTACGCTTATCGTCAAAAGAAAAGGGCTGAAAGAGCTGATCATCAGAACAATCCCTTTGCATTGTGGGACCCAAGTAAAAAAAGTGGCGGTGTTCCTCAGTTGAAAGGAGCAAGGTCTTTCTCATTTGAAGAGCTTAATAAATACACAAATAATTTTTCAGATACCAACAATATAGGATCTGGCGGGTACGGAATGGTATATAGAGGAAATCTTCCTAATGGGCAACTAATTGCCATTAAAAGAGCCGTACAAGGGTCTAAGCAGGGTGGCCTCGAGTTTAAAAATGAGCTTGAGCTCCTTTCGCGGGTTCATCACAAAAATGTTGTCAGCCTCGTGGGTTTCTGTTTCGAGCAAGGTGAACAGATGCTGATATATGAGTTTATTCCAAATGGTACACTCAAGGACAGTCTTTTAGGTACTTCCACTCATTCATAA

Network for GWHGAAZE029496

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	478	559	2.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.953
	SRR3591706	second leaf	1.053
	SRR3591707	mature leaf	8.826
	SRR3591708	Shoot apex	0.966
	SRR3591709	Stem	2.579
	SRR3591710	White floral bud	0.039
	SRR3591711	White flower	0.257
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.064
SRP173429	SRR8316895	Juvenile bud stage	1.876
	SRR8316896	Juvenile bud stage	2.242
	SRR8316897	Juvenile bud stage	0.512
	SRR8316894	Third green stage	0.231
	SRR8316900	Third green stage	1.013
	SRR8316901	Third green stage	1.147
	SRR8316898	Complete white stage	0.463
	SRR8316899	Complete white stage	2.718
	SRR8316903	Complete white stage	0.809
	SRR8316902	Silver flowering stage	0.292
	SRR8316904	Silver flowering stage	0.445
	SRR8316905	Silver flowering stage	0.056
	SRR8316906	Gold flowering stage	0.452
	SRR8316907	Gold flowering stage	0.120
	SRR8316908	Gold flowering stage	0.461
SRP132670	SRR6706286	Control	1.924
	SRR6706287	Light intensity 50%	1.667
	SRR6706288	Light intensity 20%	1.775
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.152
	CNS0095593	Slightly white alabastrum(diploid) 2	1.586
	CNS0095594	Slightly white alabastrum(diploid) 3	0.944
	CNS0095595	Whole white alabastrum(diploid) 2	1.080
	CNS0095596	Whole white alabastrum(diploid) 3	0.782
	CNS0095597	Whole white alabastrum(diploid) 4	0.381
	CNS0095598	Silvery flower (diploied) 1	1.813
	CNS0095599	Silvery flower (diploied) 2	2.017
	CNS0095600	Silvery flower (diploied) 3	1.338
	CNS0095601	Golden flower (diploid) 1	2.629
	CNS0095602	Golden flower (diploid) 2	3.153
	CNS0095603	Golden flower (diploid) 3	2.401
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.076
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.052
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.208
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.058
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.053
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.003
	CNS0095610	Silvery flower (diploied) 1	0.137
	CNS0095611	Silvery flower (diploied) 2	0.090
	CNS0095612	Silvery flower (diploied) 3	0.045
	CNS0095613	Golden flower (tetraploid) 1	0.009
	CNS0095614	Golden flower (tetraploid) 2	0.109
	CNS0095615	Golden flower (tetraploid) 3	0.040
CRA001975	CRR073297	Stem 1	2.585
	CRR073298	Stem 2	1.677
	CRR073299	Stem 3	2.284
	CRR073300	Leaf 1	2.263
	CRR073301	Leaf 2	1.643
	CRR073302	Leaf 3	2.188
	CRR073303	Juvenile bud 1	1.236
	CRR073304	Juvenile bud 2	0.938
	CRR073305	Juvenile bud 3	0.882
	CRR073306	Third green 1	0.522
	CRR073307	Third green 2	0.478
	CRR073308	Third green 3	0.515
	CRR073309	Second white 1	0.713
	CRR073310	Second white 2	0.347
	CRR073311	Second white 3	0.296
	CRR073312	Silver flowering 1	0.210
	CRR073313	Silver flowering 2	0.151
	CRR073314	Silver flowering 3	0.181
	CRR073315	Gold flowering 1	15.884
	CRR073316	Gold flowering 2	38.543
	CRR073317	Gold flowering 3	20.092
	CRR073318	Tawny withering 1	5.209
	CRR073319	Tawny withering 2	4.638
	CRR073320	Tawny withering 3	2.430