Gene detail

Detail information of GWHGAAZE029498

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009761610.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770, partial [Nicotiana sylvestris]
COG	YP_001192956.1	2E-23	two component regulator
Swissprot	tr\|Q9LT96\|Y5977_ARATH	5E-157	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|K4B1J6\|K4B1J6_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g102680.2.1}
TAIR10	AT1G79620.1	2E-153	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	24311786	24318110	+
GWHAAZE00000009	mRNA	24311786	24318110	+
GWHAAZE00000009	exon	24311786	24311937	+
GWHAAZE00000009	exon	24313166	24313240	+
GWHAAZE00000009	exon	24313337	24313408	+
GWHAAZE00000009	exon	24313730	24313831	+
GWHAAZE00000009	exon	24313931	24314005	+
GWHAAZE00000009	exon	24314220	24314291	+
GWHAAZE00000009	exon	24314391	24314462	+
GWHAAZE00000009	exon	24314575	24314643	+
GWHAAZE00000009	exon	24315135	24315275	+
GWHAAZE00000009	exon	24315407	24315478	+
GWHAAZE00000009	exon	24315628	24315759	+
GWHAAZE00000009	exon	24316142	24316620	+
GWHAAZE00000009	exon	24317152	24317298	+
GWHAAZE00000009	exon	24317394	24317530	+
GWHAAZE00000009	exon	24317805	24318110	+
GWHAAZE00000009	CDS	24311786	24311937	+
GWHAAZE00000009	CDS	24313166	24313240	+
GWHAAZE00000009	CDS	24313337	24313408	+
GWHAAZE00000009	CDS	24313730	24313831	+
GWHAAZE00000009	CDS	24313931	24314005	+
GWHAAZE00000009	CDS	24314220	24314291	+
GWHAAZE00000009	CDS	24314391	24314462	+
GWHAAZE00000009	CDS	24314575	24314643	+
GWHAAZE00000009	CDS	24315135	24315275	+
GWHAAZE00000009	CDS	24315407	24315478	+
GWHAAZE00000009	CDS	24315628	24315759	+
GWHAAZE00000009	CDS	24316142	24316620	+
GWHAAZE00000009	CDS	24317152	24317298	+
GWHAAZE00000009	CDS	24317394	24317530	+
GWHAAZE00000009	CDS	24317805	24318110	+

Transcript Sequence
>GWHTAAZE029532 ATGTGTCTTATATGTTACATTCCCGATGCAGTTGGAGCGCTAAATGCACTCAAGTCAAGCTGGCAGAACCTGCCACCCAACTGGAAGGGAGCAGATCCTTGTGGCACTGGATGGGAAGGAGTTACATGCAACAATTCACGTGTAACCCACCTGGATCTTTCAAGCAACAAAGGTCTGAGAGCACCTCTTCCACAATCACTTGGGAATTTGAAGAATCTGACTTTCTTGATCCTGGTTGGTTGCAGTTTCTATGGTCCTATTCCCGAAACAATAGGATTACTTCCTCAGCTGGTCTTTTTACTTTCATGGCTGGATCTAAGTGAAAACCAGCTCACTGGAGGAATTCCAGTCTCTAGTGGAACGGCATCTGGTCTCGATAGGCTATCTAGGGCTAGACACTTCCATTTGTCAAAGAATCGACTCTCTGGCACCATCCAACCTCAACTTTTCAGTTCAAACATGAGCCTGATACATGTAATTTTGGACCACAATAATTTCAGTGGAAACATTCCTTTTACTCTAGGAAATGTGGTGACCTTGCAGGTGATACGCCTGGACTGGAATTCCTTCATTGGGCCGGTCCCTCAAACCCTCAACAGTCTTGGAAATGTCACTGAACTGAACTTGTCCAACAATAATCTGACTGGATCGATTCCTAATCTTACAGCCTTGAATGTTCTCACCTATGTGGACATGAGTAACAATAGCTTCAATGCATCAGCCATTCCTACATGGCTTACAAGTCTCCAGTCTTTGACGACATTGTACATCTCTCTCTCTCTCTCTCTCAAACACACACTCACACCCCCACACACACAAATACACATAAAATTGATGGAACGCACACAACTTCAAGGACAGATTCCTTTTGACCTTTTCAGCCTTCCTCAATTAGAGAGAGTGGTGTTAAGCAACAACCGTCTAAGTGGAACCTTGGATATTGGCAGCAGCTATAGCAGCAACTTGACACTCGATTTACGGAGCAATTCTATTACTGCCTTTAACCAAAGTGGAGGATACAACATGAACATAACACTTGTGGATAACCCAATTTGTGAAGGAACAGGAGTGGGAGCAGGTTACTGCGCAGTCTTGAGGCCAAATTCTCCATATATACAACGATTTAGCAGCTGTACTCCCATATCTTGCAGTTCAGATAAAATATTGAGTCCAACTTGCAAATGTGCTCATCCGTTCACAGGAACCATACATTTCTATTCTTTTTCCTTCTCAAATTTGGGAAACCCTAGGTACTTTGATTCTCTCAACGGATCTCTGATGCATGCTTTTCTGGCCAGTAGTCTTCCTGTTGAGTCTGTCATTGCCAGTGATCCAGCCATCGATGAATCTTCTTATCTTCGATTCAAATTGCAAGTCTTTCCTTCTTTTGAAGAAAGATTTAATCGAACTGGAGGGTCCTTTATTAATACCCTGCTCAATCGCCAAAATATCACATTGCTTGAACAATATTTTGGACCCTTTTACTTTCTTCAGGAAAATTATAATTATTCAGGAAAGAAAAAGTCATCAAATGTTGGCATTATTGTTGGAGCAACAATTGGTAGTTTTGTGGCTGTGGTACTATTATTCTGTGCCGGGCTTTACGCTTTCCGTCAAAAGAAAAGAGCAGAAAGCGCATTGAAACAGAGCGCTCCTTTTGCATCTTGGAACCCAAATACAAGCAACGGTGGTGTTCCTCAATTACAAGGAGCAAGATGGTTCTCACTTGAAGAGATAAAGAAATGCACCAACAGTCTTTCGGATGGGAACGTTATTGGATCTGGGGGCTATGGCCAGGTTTATAAAGGAACTCTTGCCGCAGGGCAGTTAGTTGCCATCAAAAGAGCTCAACAGGGATCATTGCAGGGTGCTCATGAATTCAAAACTGAAATTGAGCTATTATCGAGGATTCATCATAAGAATGTTGTTAGCCTTGTGGGATTCTGTTACGAGCAAGGTGAACAAATGCTGGTCTATGAGTACGTGTCGAATGGTACTTTAAAGGAAAATCTTTCAGGTAATCATTTTTTGTTTCTTCCTTTAAATCTATACTCTTCACTGACTATAATAGTGAATGATGCTATATATACTATCAAAATTTGA

Network for GWHGAAZE029498

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	9	44	2.70E-05
PF07714.18	PK_Tyr_Ser-Thr	589	674	4.70E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding
GO:0004713	molecular_function	protein tyrosine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.267
	SRR3591706	second leaf	1.331
	SRR3591707	mature leaf	1.701
	SRR3591708	Shoot apex	1.393
	SRR3591709	Stem	2.249
	SRR3591710	White floral bud	2.684
	SRR3591711	White flower	3.259
	SRR3591712	Green floral bud	1.145
	SRR3591713	Yellow flower	2.803
SRP173429	SRR8316895	Juvenile bud stage	0.568
	SRR8316896	Juvenile bud stage	0.755
	SRR8316897	Juvenile bud stage	0.264
	SRR8316894	Third green stage	0.303
	SRR8316900	Third green stage	0.392
	SRR8316901	Third green stage	0.686
	SRR8316898	Complete white stage	0.294
	SRR8316899	Complete white stage	0.588
	SRR8316903	Complete white stage	0.281
	SRR8316902	Silver flowering stage	0.832
	SRR8316904	Silver flowering stage	0.606
	SRR8316905	Silver flowering stage	0.485
	SRR8316906	Gold flowering stage	1.498
	SRR8316907	Gold flowering stage	2.135
	SRR8316908	Gold flowering stage	1.733
SRP132670	SRR6706286	Control	0.541
	SRR6706287	Light intensity 50%	0.601
	SRR6706288	Light intensity 20%	0.690
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.311
	CNS0095593	Slightly white alabastrum(diploid) 2	0.143
	CNS0095594	Slightly white alabastrum(diploid) 3	0.398
	CNS0095595	Whole white alabastrum(diploid) 2	0.236
	CNS0095596	Whole white alabastrum(diploid) 3	0.428
	CNS0095597	Whole white alabastrum(diploid) 4	0.537
	CNS0095598	Silvery flower (diploied) 1	0.595
	CNS0095599	Silvery flower (diploied) 2	0.657
	CNS0095600	Silvery flower (diploied) 3	0.451
	CNS0095601	Golden flower (diploid) 1	0.469
	CNS0095602	Golden flower (diploid) 2	0.848
	CNS0095603	Golden flower (diploid) 3	0.536
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.469
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.467
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.876
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.058
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.219
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.250
	CNS0095610	Silvery flower (diploied) 1	0.750
	CNS0095611	Silvery flower (diploied) 2	0.289
	CNS0095612	Silvery flower (diploied) 3	0.816
	CNS0095613	Golden flower (tetraploid) 1	0.491
	CNS0095614	Golden flower (tetraploid) 2	0.663
	CNS0095615	Golden flower (tetraploid) 3	0.448
CRA001975	CRR073297	Stem 1	0.792
	CRR073298	Stem 2	0.344
	CRR073299	Stem 3	0.395
	CRR073300	Leaf 1	0.342
	CRR073301	Leaf 2	0.670
	CRR073302	Leaf 3	0.153
	CRR073303	Juvenile bud 1	0.121
	CRR073304	Juvenile bud 2	0.212
	CRR073305	Juvenile bud 3	0.397
	CRR073306	Third green 1	0.036
	CRR073307	Third green 2	0.006
	CRR073308	Third green 3	0.130
	CRR073309	Second white 1	0.015
	CRR073310	Second white 2	0.248
	CRR073311	Second white 3	0.160
	CRR073312	Silver flowering 1	0.566
	CRR073313	Silver flowering 2	0.100
	CRR073314	Silver flowering 3	0.282
	CRR073315	Gold flowering 1	0.353
	CRR073316	Gold flowering 2	0.558
	CRR073317	Gold flowering 3	0.334
	CRR073318	Tawny withering 1	0.770
	CRR073319	Tawny withering 2	0.423
	CRR073320	Tawny withering 3	1.074