Detail information of GWHGAAZE029605


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011047893.13.1186E-127PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
Swissprottr|Q39019|KSG10_ARATH3E-107Shaggy-related protein kinase kappa
trEMBLtr|A0A068TN06|A0A068TN06_COFCA1E-125Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97626.1}
TAIR10AT1G57870.23E-74shaggy-like kinase 42

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2979964629801344+
GWHAAZE00000009mRNA2979964629801344+
GWHAAZE00000009exon2979964629799801+
GWHAAZE00000009exon2980047529800567+
GWHAAZE00000009exon2980068529800744+
GWHAAZE00000009exon2980104229801344+
GWHAAZE00000009CDS2979964629799801+
GWHAAZE00000009CDS2980047529800567+
GWHAAZE00000009CDS2980068529800744+
GWHAAZE00000009CDS2980104229801344+
Transcript Sequence

Network for GWHGAAZE029605

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0155Protein Kinases CMGC_GSK family Protein Kinases CMGC_GSK
GO:0006468 protein phosphorylation GOslim:biological_process
GO:0004672 protein kinase activity GOslim:molecular_function
GO:0005524 ATP binding GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase891941.30E-15
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_GSK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005524molecular_functionATP binding
GO:0004672molecular_functionprotein kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf89.708
SRR3591706second leaf146.451
SRR3591707mature leaf196.232
SRR3591708Shoot apex70.318
SRR3591709Stem236.706
SRR3591710White floral bud85.870
SRR3591711White flower47.386
SRR3591712Green floral bud112.500
SRR3591713Yellow flower41.563
SRP173429 SRR8316895Juvenile bud stage 55.076
SRR8316896Juvenile bud stage 56.713
SRR8316897Juvenile bud stage 19.082
SRR8316894Third green stage 27.108
SRR8316900Third green stage 146.083
SRR8316901Third green stage 140.231
SRR8316898Complete white stage 74.547
SRR8316899Complete white stage 284.691
SRR8316903Complete white stage 99.050
SRR8316902Silver flowering stage14.426
SRR8316904Silver flowering stage18.552
SRR8316905Silver flowering stage8.516
SRR8316906Gold flowering stage 19.447
SRR8316907Gold flowering stage 21.713
SRR8316908Gold flowering stage 22.578
SRP132670SRR6706286Control143.867
SRR6706287Light intensity 50%179.952
SRR6706288Light intensity 20%215.475
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.203
CNS0095593Slightly white alabastrum(diploid) 238.820
CNS0095594Slightly white alabastrum(diploid) 328.135
CNS0095595Whole white alabastrum(diploid) 255.920
CNS0095596Whole white alabastrum(diploid) 355.532
CNS0095597Whole white alabastrum(diploid) 465.167
CNS0095598Silvery flower (diploied) 185.395
CNS0095599Silvery flower (diploied) 253.994
CNS0095600Silvery flower (diploied) 370.119
CNS0095601Golden flower (diploid) 152.650
CNS0095602Golden flower (diploid) 276.072
CNS0095603Golden flower (diploid) 375.567
CNS0095604Slightly white alabastrum(tetraploid) 159.740
CNS0095605Slightly white alabastrum(tetraploid) 236.616
CNS0095606Slightly white alabastrum(tetraploid) 3131.645
CNS0095607Whole white alabastrum(tetraploid) 129.993
CNS0095608Whole white alabastrum(tetraploid) 239.046
CNS0095609Whole white alabastrum(tetraploid) 3220.527
CNS0095610Silvery flower (diploied) 1101.304
CNS0095611Silvery flower (diploied) 2109.969
CNS0095612Silvery flower (diploied) 329.441
CNS0095613Golden flower (tetraploid) 140.922
CNS0095614Golden flower (tetraploid) 282.469
CNS0095615Golden flower (tetraploid) 320.374
CRA001975CRR073297Stem 154.647
CRR073298Stem 252.948
CRR073299Stem 340.116
CRR073300Leaf 1173.406
CRR073301Leaf 2118.935
CRR073302Leaf 393.323
CRR073303Juvenile bud 1134.310
CRR073304Juvenile bud 2163.630
CRR073305Juvenile bud 3134.274
CRR073306Third green 141.952
CRR073307Third green 231.389
CRR073308Third green 330.004
CRR073309Second white 15.911
CRR073310Second white 24.284
CRR073311Second white 32.733
CRR073312Silver flowering 11.983
CRR073313Silver flowering 21.042
CRR073314Silver flowering 30.935
CRR073315Gold flowering 145.802
CRR073316Gold flowering 272.281
CRR073317Gold flowering 348.209
CRR073318Tawny withering 144.801
CRR073319Tawny withering 238.415
CRR073320Tawny withering 359.881