Gene detail

Detail information of GWHGAAZE029741

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009758151.1	0	PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Nicotiana sylvestris]
COG	YP_006544178.1	3E-141	D-3-phosphoglycerate dehydrogenase
Swissprot	tr\|O49485\|SERA1_ARATH	0	D-3-phosphoglycerate dehydrogenase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A0A0LBW6\|A0A0A0LBW6_CUCSA	0	D-3-phosphoglycerate dehydrogenase {ECO:0000313\|EMBL:KGN57501.1}
TAIR10	AT4G34200.1	0	D-3-phosphoglycerate dehydrogenase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32159435	32165246	-
GWHAAZE00000009	mRNA	32159435	32165246	-
GWHAAZE00000009	exon	32159435	32160106	-
GWHAAZE00000009	exon	32160348	32160443	-
GWHAAZE00000009	exon	32160536	32160643	-
GWHAAZE00000009	exon	32161272	32161648	-
GWHAAZE00000009	exon	32164027	32164246	-
GWHAAZE00000009	exon	32164926	32165246	-
GWHAAZE00000009	CDS	32164926	32165246	-
GWHAAZE00000009	CDS	32164027	32164246	-
GWHAAZE00000009	CDS	32161272	32161648	-
GWHAAZE00000009	CDS	32160536	32160643	-
GWHAAZE00000009	CDS	32160348	32160443	-
GWHAAZE00000009	CDS	32159435	32160106	-

Transcript Sequence
>GWHTAAZE029775 ATGGCGGCCTTCGCTTCACCATCGACCCGTCTCTCAAATCTTTCCCTCAACAAAACACCCTCCCCTATCTCATGGAAACGCCCTCTCTCTCCCGCCTTCGGTCTCTCCTCCTTCCCCCACCGCCGCCGCTCCGCTCCTCTCTTAGTGGTTATGTCGATGGACGCTAAACCTACTGTCCTCGTCGCCGAGAAGCTCGGCGAGGCAGGTCTCAACCTCCTGAAGGAGTTTGCCAACGTCGATTGCTCCTACAATCTGAGCTCCGAGGAGCTATGCACCAAGATCTCTCTCTGTGATGCCTTGATCGTTCGTAGTGGCACCAAGGTTAGCCGCGAGGTTTTTGAATCGTCTGGTGGACGGCTAAAGGTCGTTGGCCGCGCTGGTGTAGGTATTGATAACGTGGATCTGGCGGCGGCTACTGAGCATGGTTGCCTTGTGGTTAATGCACCGACGGCTAACACAGTGGCAGCAGCGGAGCATGGGATCGCTCTGCTCACAGCTATGGCGAGGAATATTGCTCAGGCTGATGCCTCTGTCAAAGCTGGAAAGTGGCAGCGGAGCAAGTATGTGGGTGTCTCCCTTGTTGGGAAAACCCTAGCTGTGATGGGTTTCGGAAAGGTTGGTACAGAAGTTGCAAGGCGTGCAAAGGGGCTCGGTATGCATGTGATTGCTCATGACCCATATGCCCCTGCAGACCGTGCCCGAGCAATAGGAGTGGAGCTTGTAACCTTTGATGAAGCCCTTGCAACCGCCGATTTCATCTCACTTCACATGCCCCTTACTCCCACTACATCAAAGATTCTCAATGACGAAAACTTCGTAAAGATGAAGAAAGGAGTACGGATTGTCAATGTTGCTCGTGGGGGAGTAATTGATGAAGAAGCTTTACTGAAAGCACTGGATGCTGGCATTGTAGCTCAGGCTGCACTTGATGTTTTCACAGTAGAACCACCGAAGGATAACAAGTTGGTACAGCACGAGAATGTAACTGTAACTCCACATCTTGGTGCCAGTACTATGGAAGCTCAGGAAGGAGTGGCCATTGAAATAGCTGAAGCTGTTGTTGGTGCCTTGAAGGGGGAACTTGCTGCTACTGCAGTCAATGCACCCATGGTTCCTGCTGAGGTTCTAGTGGAGTTGAAGCCATACGTTGTACTTGCTGAGAAACTAGGTAGACTGGCGGTTCAATTAGTAGCAGGTGGCAGTGGGGTCAAATCCGTAAAAGTAACCTATGCTTCGGCTAGAGCCCCCGATGATCTTGACACCCGTCTCCTCCGCGCCATGATCACCAAAGGTCTAATCGAGCCCATCTCAAGCGTCTTCATAAACTTAGTAAACGCTGATTTCACCGCCAAACAAAGAGGTGTACGGATAAGTGAAGAACGTATAATCCTCGACGGGTCCCCCGAAAATCCCCTCGAGTCCATCCAAGTCCAGATTGCCAACGTCGAATCGAGATTTGCAAGTGCCATTTCTGAGTCCGGGGAGATTAAAGTAGAGGGGCGGGTCAAAGATGGGGTCCCACACTTGACCAAGGTGGGGTCCTTCGAAGTTGATGTGACTTTAGAAGGTAGCATTATACTCTGCAGGCAAGTTGATCAGCCGGGGATGATTGGAAAGGTGGGGAGTATTTTGGGGGAGGAAAATGTGAACGTTAGCTTTATGAGCGTTGGACGCACTGCTCCACGTAAGCAAGCTATTATGGCAATTGGTGTTGATGACCAGCCTAGCAAGGATTCATTGAAGAGGATTGGTGAAATTCCGGCTGTTCAGGAGTTTGTTTTTCTTAAGTTGTAG

Network for GWHGAAZE029741

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00389.31	2-Hacid_dh	59	367	7.50E-35
PF02826.20	2-Hacid_dh_C	161	335	1.60E-61
PF01842.26	ACT	525	586	8.20E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00058	serA, PHGDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Methane metabolism	map00680
		Glycine, serine and threonine metabolism	map00260
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006564	biological_process	L-serine biosynthetic process
GO:0051287	molecular_function	NAD binding
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0004617	molecular_function	phosphoglycerate dehydrogenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.902
	SRR3591706	second leaf	21.414
	SRR3591707	mature leaf	20.827
	SRR3591708	Shoot apex	28.169
	SRR3591709	Stem	30.325
	SRR3591710	White floral bud	31.570
	SRR3591711	White flower	28.287
	SRR3591712	Green floral bud	27.879
	SRR3591713	Yellow flower	22.264
SRP173429	SRR8316895	Juvenile bud stage	15.021
	SRR8316896	Juvenile bud stage	18.520
	SRR8316897	Juvenile bud stage	7.093
	SRR8316894	Third green stage	8.599
	SRR8316900	Third green stage	26.685
	SRR8316901	Third green stage	25.724
	SRR8316898	Complete white stage	17.869
	SRR8316899	Complete white stage	41.589
	SRR8316903	Complete white stage	28.790
	SRR8316902	Silver flowering stage	14.746
	SRR8316904	Silver flowering stage	24.373
	SRR8316905	Silver flowering stage	13.874
	SRR8316906	Gold flowering stage	29.741
	SRR8316907	Gold flowering stage	30.879
	SRR8316908	Gold flowering stage	34.387
SRP132670	SRR6706286	Control	31.194
	SRR6706287	Light intensity 50%	33.502
	SRR6706288	Light intensity 20%	33.256
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.256
	CNS0095593	Slightly white alabastrum(diploid) 2	18.860
	CNS0095594	Slightly white alabastrum(diploid) 3	15.497
	CNS0095595	Whole white alabastrum(diploid) 2	16.723
	CNS0095596	Whole white alabastrum(diploid) 3	18.912
	CNS0095597	Whole white alabastrum(diploid) 4	13.638
	CNS0095598	Silvery flower (diploied) 1	29.954
	CNS0095599	Silvery flower (diploied) 2	22.457
	CNS0095600	Silvery flower (diploied) 3	45.264
	CNS0095601	Golden flower (diploid) 1	21.124
	CNS0095602	Golden flower (diploid) 2	35.642
	CNS0095603	Golden flower (diploid) 3	36.876
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.847
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.565
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.878
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.724
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.942
	CNS0095610	Silvery flower (diploied) 1	35.261
	CNS0095611	Silvery flower (diploied) 2	40.200
	CNS0095612	Silvery flower (diploied) 3	43.682
	CNS0095613	Golden flower (tetraploid) 1	20.597
	CNS0095614	Golden flower (tetraploid) 2	32.498
	CNS0095615	Golden flower (tetraploid) 3	37.046
CRA001975	CRR073297	Stem 1	32.585
	CRR073298	Stem 2	28.486
	CRR073299	Stem 3	32.004
	CRR073300	Leaf 1	37.832
	CRR073301	Leaf 2	36.577
	CRR073302	Leaf 3	30.108
	CRR073303	Juvenile bud 1	37.881
	CRR073304	Juvenile bud 2	28.957
	CRR073305	Juvenile bud 3	50.593
	CRR073306	Third green 1	34.449
	CRR073307	Third green 2	29.522
	CRR073308	Third green 3	30.975
	CRR073309	Second white 1	29.825
	CRR073310	Second white 2	26.744
	CRR073311	Second white 3	25.564
	CRR073312	Silver flowering 1	17.242
	CRR073313	Silver flowering 2	16.412
	CRR073314	Silver flowering 3	15.106
	CRR073315	Gold flowering 1	21.685
	CRR073316	Gold flowering 2	29.104
	CRR073317	Gold flowering 3	26.336
	CRR073318	Tawny withering 1	37.661
	CRR073319	Tawny withering 2	30.637
	CRR073320	Tawny withering 3	42.537