Gene detail

Detail information of GWHGAAZE029816

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010943272.1	PREDICTED: tubulin alpha chain-like [Elaeis guineensis]
Swissprot	tr\|P33629\|TBA_PRUDU	Tubulin alpha chain
trEMBL	tr\|A0A061FM71\|A0A061FM71_THECC	Tubulin alpha-2 chain {ECO:0000313\|EMBL:EOY15594.1}
TAIR10	AT1G50010.1	tubulin alpha-2 chain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	33767051	33770085	+
GWHAAZE00000009	mRNA	33767051	33770085	+
GWHAAZE00000009	exon	33767051	33767143	+
GWHAAZE00000009	exon	33768234	33768468	+
GWHAAZE00000009	exon	33768785	33769155	+
GWHAAZE00000009	exon	33769432	33770085	+
GWHAAZE00000009	CDS	33767051	33767143	+
GWHAAZE00000009	CDS	33768234	33768468	+
GWHAAZE00000009	CDS	33768785	33769155	+
GWHAAZE00000009	CDS	33769432	33770085	+

Transcript Sequence
>GWHTAAZE029850 ATGAGGGAGTGCATTTCGATCCACATCGGTCAGGCTGGTATTCAGGTCGGCAATGCATGCTGGGAACTTTACTGCCTCGAGCATGGCATTCAGCCTGATGGCCAAATGCCGAGTGACAAGACTATTGGAGGAGGTGATGATGCCTTCAACACCTTTTTCAGTGAAACTGGTGCCGGGAAGCATGTCCCACGTGCTGTCTTCGTGGATCTTGAGCCCACTGTTATTGATGAAGTGAGGACTGGAACTTACCGCCAACTCTTCCACCCTGAACAGTTGATCAGCGGGAAAGAAGATGCAGCCAACAACTTTGCCCGTGGCCACTACACAATTGGGAAAGAAATTGTGGATCTGTGCTTGGACCGAATCAGAAAGCTTGCTGACAACTGCACTGGGCTCCAAGGGTTCCTCGTCTTTAATGCTGTTGGTGGAGGCACTGGTTCTGGTCTGGGATCCCTGCTTTTGGAGCGTCTTTCTGTTGATTACGGAAAGAAATCAAAGCTTGGTTTCACCGTCTATCCATCCCCGCAGGTCTCCACATCTGTTGTTGAGCCCTACAACAGTGTCCTTTCGACACACTCTCTCCTGGAACACACTGACGTTGCCATACTTCTTGACAACGAGGCCATTTATGATATCTGCAGGCGCTCACTTGACATTGAGCGTCCCACCTACACCAACCTTAACCGCCTCGTCTCACAGGTGATTTCCTCATTGACAGCATCTCTGAGGTTCGATGGTGCCCTAAACGTGGATGTGACCGAATTCCAGACCAACTTGGTCCCCTACCCCAGAATCCACTTCATGCTCTCCTCATACGCCCCTGTTATCTCAGCTGAGAAAGCCTACCATGAGCAGCTCTCCGTCGCTGAAATCACCAACAGTGCATTCGAGCCTTCGTCTATGATGGCCAAGTGCGACCCACGCCACGGCAAGTACATGGCCTGCTGCCTCATGTACCGTGGTGACGTAGTCCCGAAAGACGTGAACGCTGCAGTTGCCACCATCAAGACCAAGCGCACCATTCAGTTTGTGGACTGGTGCCCTACTGGGTTCAAGTGTGGAATCAATTACCAGCCACCTACGGTTGTGCCGGGGGGTGACTTGGCCAAGGTGCAGAGGGCTGTTTGTATGATTTCTAACTCGACCAGTGTGGCCGAAGTGTTCTCGAGGATTGACCACAAGTTTGATCTTATGTACGCCAAGCGGGCCTTTGTGCATTGGTATGTGGGTGAGGGGATGGAGGAGGGTGAGTTCTCTGAAGCTCGTGAGGATTTGGCGGCTTTGGAGAAGGACTATGAGGAGGTTGGTGCTGAGGGGGCTGAGGATGATGGTGATGAAGGTGAAGAGTACTGA

Network for GWHGAAZE029816

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.26	Tubulin	3	213	5.80E-68
PF03953.18	Tubulin_C	263	392	2.30E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07374	TUBA	Phagosome	map04145
		Apoptosis	map04210
		Tight junction	map04530
		Gap junction	map04540

Gene Ontology

GO term	Ontology	Name
GO:0007017	biological_process	microtubule-based process
GO:0005874	cellular_component	microtubule
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding
GO:0005200	molecular_function	structural constituent of cytoskeleton

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	432.931
	SRR3591706	second leaf	93.227
	SRR3591707	mature leaf	8.762
	SRR3591708	Shoot apex	144.193
	SRR3591709	Stem	432.152
	SRR3591710	White floral bud	148.704
	SRR3591711	White flower	35.176
	SRR3591712	Green floral bud	261.627
	SRR3591713	Yellow flower	17.148
SRP173429	SRR8316895	Juvenile bud stage	87.961
	SRR8316896	Juvenile bud stage	106.124
	SRR8316897	Juvenile bud stage	47.070
	SRR8316894	Third green stage	43.144
	SRR8316900	Third green stage	137.675
	SRR8316901	Third green stage	143.771
	SRR8316898	Complete white stage	16.445
	SRR8316899	Complete white stage	56.673
	SRR8316903	Complete white stage	18.763
	SRR8316902	Silver flowering stage	5.248
	SRR8316904	Silver flowering stage	7.818
	SRR8316905	Silver flowering stage	3.857
	SRR8316906	Gold flowering stage	6.440
	SRR8316907	Gold flowering stage	5.639
	SRR8316908	Gold flowering stage	5.909
SRP132670	SRR6706286	Control	129.751
	SRR6706287	Light intensity 50%	135.063
	SRR6706288	Light intensity 20%	135.854
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	164.408
	CNS0095593	Slightly white alabastrum(diploid) 2	165.340
	CNS0095594	Slightly white alabastrum(diploid) 3	171.540
	CNS0095595	Whole white alabastrum(diploid) 2	220.892
	CNS0095596	Whole white alabastrum(diploid) 3	286.863
	CNS0095597	Whole white alabastrum(diploid) 4	252.833
	CNS0095598	Silvery flower (diploied) 1	25.611
	CNS0095599	Silvery flower (diploied) 2	33.400
	CNS0095600	Silvery flower (diploied) 3	26.500
	CNS0095601	Golden flower (diploid) 1	16.331
	CNS0095602	Golden flower (diploid) 2	16.907
	CNS0095603	Golden flower (diploid) 3	18.507
	CNS0095604	Slightly white alabastrum(tetraploid) 1	232.636
	CNS0095605	Slightly white alabastrum(tetraploid) 2	250.223
	CNS0095606	Slightly white alabastrum(tetraploid) 3	175.870
	CNS0095607	Whole white alabastrum(tetraploid) 1	297.527
	CNS0095608	Whole white alabastrum(tetraploid) 2	274.620
	CNS0095609	Whole white alabastrum(tetraploid) 3	206.533
	CNS0095610	Silvery flower (diploied) 1	18.305
	CNS0095611	Silvery flower (diploied) 2	20.896
	CNS0095612	Silvery flower (diploied) 3	31.240
	CNS0095613	Golden flower (tetraploid) 1	13.241
	CNS0095614	Golden flower (tetraploid) 2	11.641
	CNS0095615	Golden flower (tetraploid) 3	18.580
CRA001975	CRR073297	Stem 1	328.441
	CRR073298	Stem 2	252.126
	CRR073299	Stem 3	534.765
	CRR073300	Leaf 1	291.218
	CRR073301	Leaf 2	248.401
	CRR073302	Leaf 3	331.147
	CRR073303	Juvenile bud 1	257.967
	CRR073304	Juvenile bud 2	253.188
	CRR073305	Juvenile bud 3	143.611
	CRR073306	Third green 1	69.359
	CRR073307	Third green 2	102.271
	CRR073308	Third green 3	75.382
	CRR073309	Second white 1	5.994
	CRR073310	Second white 2	10.605
	CRR073311	Second white 3	10.019
	CRR073312	Silver flowering 1	33.343
	CRR073313	Silver flowering 2	30.094
	CRR073314	Silver flowering 3	21.182
	CRR073315	Gold flowering 1	56.068
	CRR073316	Gold flowering 2	32.284
	CRR073317	Gold flowering 3	36.092
	CRR073318	Tawny withering 1	583.279
	CRR073319	Tawny withering 2	329.031
	CRR073320	Tawny withering 3	774.961