Gene detail

Detail information of GWHGAAZE029879

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007042820.1	3.2742E-135	Zim-like 2 [Theobroma cacao]
Swissprot	tr\|Q8GXL7\|GAT24_ARATH	3E-83	GATA transcription factor 24
trEMBL	tr\|A0A061E2X9\|A0A061E2X9_THECC	1E-135	Zim-like 2 {ECO:0000313\|EMBL:EOX98651.1}
TAIR10	AT3G21175.2	4E-70	ZIM-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34747729	34753802	-
GWHAAZE00000009	mRNA	34747729	34753802	-
GWHAAZE00000009	exon	34753461	34753802	-
GWHAAZE00000009	exon	34751775	34751858	-
GWHAAZE00000009	exon	34751554	34751687	-
GWHAAZE00000009	exon	34749978	34750088	-
GWHAAZE00000009	exon	34749673	34749778	-
GWHAAZE00000009	exon	34748871	34748942	-
GWHAAZE00000009	exon	34747729	34748117	-
GWHAAZE00000009	CDS	34753461	34753802	-
GWHAAZE00000009	CDS	34751775	34751858	-
GWHAAZE00000009	CDS	34751554	34751687	-
GWHAAZE00000009	CDS	34749978	34750088	-
GWHAAZE00000009	CDS	34749673	34749778	-
GWHAAZE00000009	CDS	34748871	34748942	-
GWHAAZE00000009	CDS	34748022	34748117	-
GWHAAZE00000009	three_prime_UTR	34747729	34748021	-

Transcript Sequence
>GWHTAAZE029913 ATGTACGAAACGGAGGCAATGAACATACAGCATCAACAACAACAACAGCAGCAGCAGCAAAACCCTAACCACCAGATCGAGGATGAAGAAGAAGATGATGTTGCCGGCGGTGAGTCGATAGACAATCCTCAGATCCGGTACGAAGCTCAAGCTCTCCAAAACGGCGCCGTTGGTAGCGGTGGAATGGAGGCAATGGGCGGTGTTGATGGTGTTGTTGCGCCGCATGCTCTGTATGTTCCCGGTTCTGAAATTCCTCCGGCGGCCAGTGGAGGAGGGGCCGACCAGCTTACCCTGTCGTTTCAGGGAGAGGTGTACGTGTTTGATGCTGTTTCGCCTGAAAAGGTCCAGGCAGTGTTGTTACTCTTGGGTGGATATGAAGTACCCACTGGTATTCCTACTATAGGGATGCCTCCGCAGAATCAACGGGGTCTGGGTGAGTTTCCTGGAAGGTCAAGTCAACCACAAAGGGCTGCTTCTTTGAGTCGGTTCAGGGAGAAGAGAAAAGAAAGATGTTTTGATAAGAAAATCCGTTACAATGTGAGGAAGGAAGTTGCACTTAGGATGCAGCGTAAGAAGGGTCAGTTTACATCTTCCAAGGCAGTTTCTGATGAAGTTGGTTCGGCTTCTTCAGACTGGAATGGAAGTTCTGGTCAAGATGAACAGGAAACTTCATGTAGACACTGTGGAATTAGCTCAAAATCCACTCCAATGATGCGTCGTGGGCCTGATGGGCCAAGGACATTATGCAATGCCTGCGGACTCAAGTGGGCCAACAAGGGAGTTCTAAGAGACCTTTCTAAGGTTCCAACTATGGGAATCCAGGACCCTAATGCGAAGATTACTGAACAGAGCGACGGTGAAGCTAATGATTCGGATGCAGTAACTGTTACTGTTGATGTCATCTCTTCTAACGGGGATAATTTGGCTTTGACGGCAGAACGGTAATTGAGAATTTACAGCCGTTGCAGCGAATGCGAGATCCAAGATGGCGCTAATGAAATATGGTTGTGAAATAAAGGGGAATTTTCTGTCAGAAAAGAAAAACTTGTTATAGCGAGATTTTTGTACATATAGTTGATGTGCCTTGATCAGTACGCGAGCTTTGTATCATAAACATCACTACAGAGCCTGATTTGGGACTGTATTTCTCATTTTTATTGTTGCCCATGTGCATGTGGTTATCATGTCCTGCTTACAGTTTGAATTTGGGACCAATCTGGAAGAGAAATAACTGGTAA

Network for GWHGAAZE029879

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06200.15	tify	94	123	3.90E-12
PF06203.15	CCT	156	198	2.50E-15
PF00320.28	GATA	225	261	1.70E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0008270	molecular_function	zinc ion binding
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.965
	SRR3591706	second leaf	52.671
	SRR3591707	mature leaf	79.810
	SRR3591708	Shoot apex	48.208
	SRR3591709	Stem	44.244
	SRR3591710	White floral bud	43.118
	SRR3591711	White flower	40.790
	SRR3591712	Green floral bud	38.708
	SRR3591713	Yellow flower	44.037
SRP173429	SRR8316895	Juvenile bud stage	20.215
	SRR8316896	Juvenile bud stage	27.704
	SRR8316897	Juvenile bud stage	11.970
	SRR8316894	Third green stage	12.413
	SRR8316900	Third green stage	33.785
	SRR8316901	Third green stage	33.194
	SRR8316898	Complete white stage	13.778
	SRR8316899	Complete white stage	48.311
	SRR8316903	Complete white stage	22.690
	SRR8316902	Silver flowering stage	15.713
	SRR8316904	Silver flowering stage	18.965
	SRR8316905	Silver flowering stage	10.602
	SRR8316906	Gold flowering stage	44.774
	SRR8316907	Gold flowering stage	39.571
	SRR8316908	Gold flowering stage	43.076
SRP132670	SRR6706286	Control	32.118
	SRR6706287	Light intensity 50%	32.325
	SRR6706288	Light intensity 20%	33.080
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.375
	CNS0095593	Slightly white alabastrum(diploid) 2	29.414
	CNS0095594	Slightly white alabastrum(diploid) 3	24.118
	CNS0095595	Whole white alabastrum(diploid) 2	22.986
	CNS0095596	Whole white alabastrum(diploid) 3	22.048
	CNS0095597	Whole white alabastrum(diploid) 4	23.687
	CNS0095598	Silvery flower (diploied) 1	29.250
	CNS0095599	Silvery flower (diploied) 2	28.320
	CNS0095600	Silvery flower (diploied) 3	29.038
	CNS0095601	Golden flower (diploid) 1	29.583
	CNS0095602	Golden flower (diploid) 2	33.182
	CNS0095603	Golden flower (diploid) 3	33.233
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.642
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.757
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.064
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.163
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.699
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.290
	CNS0095610	Silvery flower (diploied) 1	33.858
	CNS0095611	Silvery flower (diploied) 2	33.763
	CNS0095612	Silvery flower (diploied) 3	28.091
	CNS0095613	Golden flower (tetraploid) 1	30.864
	CNS0095614	Golden flower (tetraploid) 2	36.383
	CNS0095615	Golden flower (tetraploid) 3	42.445
CRA001975	CRR073297	Stem 1	39.302
	CRR073298	Stem 2	37.582
	CRR073299	Stem 3	47.046
	CRR073300	Leaf 1	40.563
	CRR073301	Leaf 2	40.070
	CRR073302	Leaf 3	36.241
	CRR073303	Juvenile bud 1	46.906
	CRR073304	Juvenile bud 2	38.490
	CRR073305	Juvenile bud 3	48.448
	CRR073306	Third green 1	29.879
	CRR073307	Third green 2	25.383
	CRR073308	Third green 3	27.812
	CRR073309	Second white 1	34.598
	CRR073310	Second white 2	34.139
	CRR073311	Second white 3	32.044
	CRR073312	Silver flowering 1	31.663
	CRR073313	Silver flowering 2	35.175
	CRR073314	Silver flowering 3	34.651
	CRR073315	Gold flowering 1	74.465
	CRR073316	Gold flowering 2	78.279
	CRR073317	Gold flowering 3	68.573
	CRR073318	Tawny withering 1	44.681
	CRR073319	Tawny withering 2	32.601
	CRR073320	Tawny withering 3	36.734