Gene detail

Detail information of GWHGAAZE029933

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282377.1	0	PREDICTED: E3 ubiquitin-protein ligase MBR2 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9ZQF9\|MBR1_ARATH	2E-113	E3 ubiquitin-protein ligase MBR1
trEMBL	tr\|F6HQ93\|F6HQ93_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56850.1}
TAIR10	AT2G15530.3	2E-75	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35550218	35558525	+
GWHAAZE00000009	mRNA	35550218	35558525	+
GWHAAZE00000009	exon	35550218	35551933	+
GWHAAZE00000009	exon	35554385	35554438	+
GWHAAZE00000009	exon	35556151	35556201	+
GWHAAZE00000009	exon	35557105	35557200	+
GWHAAZE00000009	exon	35557280	35557423	+
GWHAAZE00000009	exon	35558394	35558525	+
GWHAAZE00000009	CDS	35550218	35551933	+
GWHAAZE00000009	CDS	35554385	35554438	+
GWHAAZE00000009	CDS	35556151	35556201	+
GWHAAZE00000009	CDS	35557105	35557200	+
GWHAAZE00000009	CDS	35557280	35557423	+
GWHAAZE00000009	CDS	35558394	35558525	+

Transcript Sequence
>GWHTAAZE029967 ATGCAAGGGCAAAGGAGTGCATTGGATTCCTTCCCTGAGACTGTTGATCTTAACCAGGGATCTGTTTCTAACAACACTGATATGGATCATTCGTCTGCTTGGAATAACATGCTAAATCCAGTGGAAAACCGGTTGTCAAATTATGCACTTTCTTCTAGTGAGGGGAGTTTTAGTTGCATGAATGCTGTTGGTCATAATGATAGGAGTTTTAGTGGTTGGGACTTAGGTGAATCTAGCTCCAGTGCAAGCTTACAAGACCAGGGTGATGGTCTGAAAGTGGAACATGGTTGGTCTTCTTCGTTCAACACTTGTTCTAGTGCCGATGCAAGACTGGTAGAACGGCAATATGAACCATCTATTGGTAGTGGTCTTGGTGGCAATCAGGTTACAGGGGAACATATGAGTATGCAGAGTTCTGGTTCTAGTCATATGCCTGTAAATGTGAATTTAAACGCTAGATATGCAGGTGATATTGATGACGGGGGGCAGGGTGTTGGAGCAGGTTTATATCCAAGTTTCTACAAGCCAGGTGTAGCAGAGGTAGGACAAATTCCATCTGCTAGTGCTTCTGATGAGGTTGGAACTTCTTCTGATACTTTGGGGACTTGGGGCTTATCCTGCAAGAGAAAGGCCCTTGAAGGTACTTCTGGACAATCTTATCCAAGTGGGAGTTCAAGCTGCATTCCACAAACTGAGAATATTGCACTGAATACTGTTCCTGCCCGTCACAATGCTTCTAGCAGCTTAAGTATATCTTCACCTCCAATGAACTCTCCCAGTGTTGGCCGTTTTGAACAGCTGAACTCAAGAATGGGAGTTGGCACAAGAGGAGTAGCTTCTGATGTCTTTCCTCCTCTAAGTGTTACAGGAATTGTGGAAAGCTCCCACAGAAATTATGGGGTGAGAATAAACCATGGACATCAGGAATCTGTTCTGTCAAATGTAGCATCAACTGGGAGTTCCGTAAGACGGTCTAGTGTTCGTTCTCCACACCAGTCATCTAGACCTATGTCGTTTACTGATTCATTTGAATTCAGACCAACTTCTTCAGTGTCAACCAATTTAAATAGTCACTCAAATCAGTCTCACTTGATTCACCTTCCTGGTCTGCCAAGAAATACACAGCCTTATCCTTGGAGTGGTGCTCTTAATTCAAGACCCGGCAGTTCATCAAGTTCTCTTACACTTTCTGGAGACAGAGGTGCTGCACTACGAGAAGAAGCAAACTTTAGAGGCACTCTAAGAAACAATGCAGAGCATCCTCCCATGTTCGTTACCATGTCAGAGACTAGAAATTTGGTGCAAGATCCAACTAATTGGAGTTTAGCGACTGGAAGTTCAAGCTCTTCCGGGGGTGCTCCTCCTAGTTCACGAGTTGGTCCCGGTTCTGGTGCACGTCCTTTTCCTACTGTCTGGGTACCTCATCACAACCCACCAACACAAAATCCTCAAAGATTAACAGAATTTGCTCCGTGGTCTCTGTTTCCACCTGTTGAATCTGAGGCTGGAGGGCAGAGAAGTCATTTTCCCCCATATGGTGCTGGCCCTTCTTCTTCTTCTTCTTCTTCCCCGGAGGAGACAGGGATGTCATCTGGAGCAAACAGCCAGGGCCACCATCAATCATATCCAAGGTCATTGTTGGAGGTACCGGATGATGTTAATGGTTGGCGCGCTTTAGCTGCTGACATTGAGGGAAGACAGAGACTGGTATCTGAGGAAATGGTACGTGTGAAAGGGGTTCCAGGGGTAGTGGAACAAGCAATGAAACAGATTCGTCAAGTCCTGAATGCCATGAGGAGGGGTGAGAGCTTACGGGCTGAGGATTATATGCTTTTTGATCCATTTATAAATGGAGTTGCGGAGATGCATGACAGGCACCGAGATATGAGGCTTGATGTTGATAACATGTCATATGAGGAATTACTGGCACTGGAAGAACGTATAGGAGATGTAAACACCGGATTGAGCGAAGAAACCATATTAGAGACTATGAAACAGCAGAAGTATCTATCAACCACATTCGTACTCTGCGCAAAAATGGAGCCATGCTGTATATGTCAGGAGGAATATGTGAATGGAGACGATATTGGGACTTTGCAGTGCGGGCATGACTTCCATACAGCTTGCATCAAGCAGTGGTTAATGCAGAAGAATCTGTGCCCCATATGCAAAATGACGGGGCTGGGAACGTGA

Network for GWHGAAZE029933

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	683	724	9.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.391
	SRR3591706	second leaf	11.741
	SRR3591707	mature leaf	17.894
	SRR3591708	Shoot apex	11.600
	SRR3591709	Stem	29.692
	SRR3591710	White floral bud	21.656
	SRR3591711	White flower	23.154
	SRR3591712	Green floral bud	16.521
	SRR3591713	Yellow flower	15.357
SRP173429	SRR8316895	Juvenile bud stage	15.014
	SRR8316896	Juvenile bud stage	22.503
	SRR8316897	Juvenile bud stage	5.994
	SRR8316894	Third green stage	9.052
	SRR8316900	Third green stage	25.522
	SRR8316901	Third green stage	23.869
	SRR8316898	Complete white stage	14.052
	SRR8316899	Complete white stage	31.116
	SRR8316903	Complete white stage	19.679
	SRR8316902	Silver flowering stage	14.181
	SRR8316904	Silver flowering stage	18.080
	SRR8316905	Silver flowering stage	7.704
	SRR8316906	Gold flowering stage	25.831
	SRR8316907	Gold flowering stage	25.572
	SRR8316908	Gold flowering stage	21.768
SRP132670	SRR6706286	Control	22.349
	SRR6706287	Light intensity 50%	24.951
	SRR6706288	Light intensity 20%	26.359
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.181
	CNS0095593	Slightly white alabastrum(diploid) 2	18.990
	CNS0095594	Slightly white alabastrum(diploid) 3	19.679
	CNS0095595	Whole white alabastrum(diploid) 2	20.141
	CNS0095596	Whole white alabastrum(diploid) 3	20.080
	CNS0095597	Whole white alabastrum(diploid) 4	23.476
	CNS0095598	Silvery flower (diploied) 1	27.562
	CNS0095599	Silvery flower (diploied) 2	24.274
	CNS0095600	Silvery flower (diploied) 3	41.129
	CNS0095601	Golden flower (diploid) 1	24.853
	CNS0095602	Golden flower (diploid) 2	35.058
	CNS0095603	Golden flower (diploid) 3	36.928
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.340
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.489
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.027
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.570
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.331
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.421
	CNS0095610	Silvery flower (diploied) 1	31.501
	CNS0095611	Silvery flower (diploied) 2	31.419
	CNS0095612	Silvery flower (diploied) 3	22.863
	CNS0095613	Golden flower (tetraploid) 1	15.263
	CNS0095614	Golden flower (tetraploid) 2	25.771
	CNS0095615	Golden flower (tetraploid) 3	16.189
CRA001975	CRR073297	Stem 1	26.624
	CRR073298	Stem 2	24.411
	CRR073299	Stem 3	21.772
	CRR073300	Leaf 1	30.617
	CRR073301	Leaf 2	27.219
	CRR073302	Leaf 3	18.642
	CRR073303	Juvenile bud 1	26.217
	CRR073304	Juvenile bud 2	20.199
	CRR073305	Juvenile bud 3	29.066
	CRR073306	Third green 1	16.585
	CRR073307	Third green 2	12.109
	CRR073308	Third green 3	16.194
	CRR073309	Second white 1	13.355
	CRR073310	Second white 2	13.270
	CRR073311	Second white 3	12.743
	CRR073312	Silver flowering 1	7.797
	CRR073313	Silver flowering 2	4.811
	CRR073314	Silver flowering 3	5.107
	CRR073315	Gold flowering 1	16.249
	CRR073316	Gold flowering 2	29.712
	CRR073317	Gold flowering 3	17.037
	CRR073318	Tawny withering 1	26.050
	CRR073319	Tawny withering 2	21.481
	CRR073320	Tawny withering 3	22.195