Gene detail

Detail information of GWHGAAZE029942

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282377.1	0	PREDICTED: E3 ubiquitin-protein ligase MBR2 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9ZQF9\|MBR1_ARATH	6E-111	E3 ubiquitin-protein ligase MBR1
trEMBL	tr\|F6HQ93\|F6HQ93_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56850.1}
TAIR10	AT2G15530.3	8E-76	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35692904	35701949	+
GWHAAZE00000009	mRNA	35692904	35701949	+
GWHAAZE00000009	exon	35692904	35693287	+
GWHAAZE00000009	exon	35693391	35694617	+
GWHAAZE00000009	exon	35697792	35697845	+
GWHAAZE00000009	exon	35699573	35699623	+
GWHAAZE00000009	exon	35700525	35700620	+
GWHAAZE00000009	exon	35700700	35700843	+
GWHAAZE00000009	exon	35701818	35701949	+
GWHAAZE00000009	CDS	35692904	35693287	+
GWHAAZE00000009	CDS	35693391	35694617	+
GWHAAZE00000009	CDS	35697792	35697845	+
GWHAAZE00000009	CDS	35699573	35699623	+
GWHAAZE00000009	CDS	35700525	35700620	+
GWHAAZE00000009	CDS	35700700	35700843	+
GWHAAZE00000009	CDS	35701818	35701949	+

Transcript Sequence
>GWHTAAZE029976 ATGCAAGGGCAAAGGAGTGCATTGGATTCCTTCCCTGAGACTGTTGATCTTAACCAGGGATCTGTTTCCAACAACACTGATATGGATCATTCGTCTGCTTGGAATAACATGCTAAATCCAGTGGAAAACCGGTTGTCAAATTATGCACTTTCTTCTAGTGAGGGGAGTTTTAGTTGCATGAATGCTGTTGGTCATAATGATAGGAGTTTTAGTGGTTGGGACTTGGGTGAATCTAGCTCCGGTGCAAGCTTACAAGACCAGGGTGATGGTCTGAAAGTGGAACATGGTTGGTCTTCTTCGTTCAACACTTGTTCTAGTGCCGATGCAAGACTGGTAGAACGGCAATATGAACCATCTATTGTTAGTGGTCTTGGTGGCAATCAGGGTGTTGGAGCAGGTTTATATCCAAGTTTCTACAAGCCAGGTGTAGCAGAGGTAGGACAAATTCCATCTGCTAGTGCTTCTGATGAGGTTGGAACTTCTTCTGATACTTTGGGGACTTGGGGCTTATCCTGCAAGAGAAAGGCCCTTGAAGGTACTTCTGGACAATCTTATCCAAGTGGGAGTTCAAGCTGCATTCCACAAACTGAGAATATTGCACTGAATACTGTTCCTGCCCGTCACAATGCTTCTAGCAGCTTAAGTATATCTTCACCTCCAATGAACTCTCCCAGTGTTGGCCGTTTTGAACAGCTGAACTCAAGAATGGGAGTTGGCACAAGAGGAGTAGCTTCTGATGTCTTTCCTCCTCTAAGTGTTACAGGAATTGTGGAAAGCTCCCACAGAAATTATGGGGTGAGAATAAACCAGGGACATCAGGAACCTGTTCTGTCAAATGTAGCATCAACTGGGAGTTCCGTAAGACGGTCTAGTGTTCGTTCTCCACACCAGTCATCTAGACCCATGTCGTTTACTGATTCATTTGAATTCAGACCAACTTCTTCAGTGTCAACCAATTTAAATAGTCACTCAAATCAGTCTCACTTGATTCACCTTCCTGGTCTGCCAAGAAATACACATCCTTATCCTTGGAGTGGTGCTCTTAATTCAAGACCCGGCAGTTCATCAAGTTCTCTTACACTTTCTGGAGACAGAGGTGCTGCACTACGAGAAGAAGCAAACTTTAGAGGCACTCTAAGAAACAATGCAGAGCATCCTCCCATGTTCGTTACCATGTCGGAGACTAGAAATTTGGTGCAAGATCCAACTAATTGGAGTTTAGCGACTGGAAGTTCAAGCTCTTCTGGGGGTGCTCCTCCTAGTTCACGAGTTGGTCCCGGTTCTGGTGCACGTCCTTTTCCTACTGTCTGGGTACCTCATCACAACCCACCAACACAAAATCCTCAAAGATTAACAGAATTTGCTCCATGGTCTCTGTTTCCACCTGTTGAATCTGAGGCTGGAGGGCAGAGAAGTCATTTTCCCCCATATGGTGCTGGCCCTTCTTCTTCTTCTTCTTCTTCCCCGGAGGAGACAGGGATGTCATCTGGAGCAAACAGCCAGGGCCACCATCAATCATATCCAAGGTCATTGTTGGAGGTACCGGATGATGTTAATAGTTGGCGCGCTTTAGCTGCTGACATTGAGGGGAGACAGAGACTGGTATCTGAGGAAATGGTACGTGTGAAAGGGGTTCCAGGGGCAGTGGAACAAGCAATCAAACAGATTCGTCAAGTCCTGAATGCCATGAGGAGGGGTGAGAGCTTACGGGCTGAGGATTATATGCTTTTTGATCCATTTATAAATGGAGTTGCGGAGATGCATGACAGGCACCGAGATATGAGGCTTGATGTTGATAACATGTCATATGAGGAATTACTGGCACTGGAAGAACGTATAGGAGATGTAAACACCGGATTGAGCGAAGAAACCATATTAGAGACTATGAAACAGCAGAAGTATCTATCAACCACGTTCGTACTCTGCGCAAAAATGGAGCCTTGCTGTATATGTCAGGAGGAATATGTGAATGGAGACGATATTGGGACTTTGCAGTGCGGGCATGACTTCCATACAGCTTGCATCAAGCAGTGGTTAATGCAGAAGAATCTGTGCCCCATATGCAAAATGACGGGGCTGGGAACGTGA

Network for GWHGAAZE029942

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	648	689	8.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.610
	SRR3591706	second leaf	33.130
	SRR3591707	mature leaf	41.449
	SRR3591708	Shoot apex	31.042
	SRR3591709	Stem	68.719
	SRR3591710	White floral bud	48.786
	SRR3591711	White flower	56.917
	SRR3591712	Green floral bud	41.326
	SRR3591713	Yellow flower	46.827
SRP173429	SRR8316895	Juvenile bud stage	13.201
	SRR8316896	Juvenile bud stage	21.077
	SRR8316897	Juvenile bud stage	13.660
	SRR8316894	Third green stage	7.619
	SRR8316900	Third green stage	23.463
	SRR8316901	Third green stage	22.574
	SRR8316898	Complete white stage	12.225
	SRR8316899	Complete white stage	29.783
	SRR8316903	Complete white stage	20.289
	SRR8316902	Silver flowering stage	13.137
	SRR8316904	Silver flowering stage	16.098
	SRR8316905	Silver flowering stage	7.392
	SRR8316906	Gold flowering stage	26.846
	SRR8316907	Gold flowering stage	24.082
	SRR8316908	Gold flowering stage	39.292
SRP132670	SRR6706286	Control	20.604
	SRR6706287	Light intensity 50%	22.312
	SRR6706288	Light intensity 20%	24.772
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.620
	CNS0095593	Slightly white alabastrum(diploid) 2	17.794
	CNS0095594	Slightly white alabastrum(diploid) 3	18.093
	CNS0095595	Whole white alabastrum(diploid) 2	21.198
	CNS0095596	Whole white alabastrum(diploid) 3	22.421
	CNS0095597	Whole white alabastrum(diploid) 4	23.391
	CNS0095598	Silvery flower (diploied) 1	29.127
	CNS0095599	Silvery flower (diploied) 2	24.971
	CNS0095600	Silvery flower (diploied) 3	40.592
	CNS0095601	Golden flower (diploid) 1	27.137
	CNS0095602	Golden flower (diploid) 2	36.629
	CNS0095603	Golden flower (diploid) 3	36.295
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.010
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.671
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.391
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.225
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.088
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.099
	CNS0095610	Silvery flower (diploied) 1	74.082
	CNS0095611	Silvery flower (diploied) 2	80.704
	CNS0095612	Silvery flower (diploied) 3	59.447
	CNS0095613	Golden flower (tetraploid) 1	41.237
	CNS0095614	Golden flower (tetraploid) 2	60.313
	CNS0095615	Golden flower (tetraploid) 3	39.960
CRA001975	CRR073297	Stem 1	26.181
	CRR073298	Stem 2	26.503
	CRR073299	Stem 3	22.689
	CRR073300	Leaf 1	30.909
	CRR073301	Leaf 2	28.872
	CRR073302	Leaf 3	22.859
	CRR073303	Juvenile bud 1	28.534
	CRR073304	Juvenile bud 2	20.222
	CRR073305	Juvenile bud 3	31.789
	CRR073306	Third green 1	17.686
	CRR073307	Third green 2	13.711
	CRR073308	Third green 3	17.478
	CRR073309	Second white 1	18.230
	CRR073310	Second white 2	16.549
	CRR073311	Second white 3	16.435
	CRR073312	Silver flowering 1	10.109
	CRR073313	Silver flowering 2	7.678
	CRR073314	Silver flowering 3	7.841
	CRR073315	Gold flowering 1	21.735
	CRR073316	Gold flowering 2	33.657
	CRR073317	Gold flowering 3	23.165
	CRR073318	Tawny withering 1	29.128
	CRR073319	Tawny withering 2	22.565
	CRR073320	Tawny withering 3	22.435