Gene detail

Detail information of GWHGAAZE030013

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010244320.1	0	PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like [Nelumbo nucifera]
Swissprot	tr\|Q9ZSJ0\|RGXT2_ARATH	0.0000003	UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2
trEMBL	tr\|F6H1G6\|F6H1G6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45925.1}
TAIR10	AT1G75110.1	7E-178	Nucleotide-diphospho-sugar transferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	36682048	36685244	-
GWHAAZE00000009	mRNA	36682048	36685244	-
GWHAAZE00000009	exon	36685047	36685244	-
GWHAAZE00000009	exon	36683122	36684230	-
GWHAAZE00000009	exon	36682048	36682099	-
GWHAAZE00000009	CDS	36685047	36685244	-
GWHAAZE00000009	CDS	36683122	36684230	-
GWHAAZE00000009	CDS	36682048	36682099	-

Transcript Sequence
>GWHTAAZE030047 ATGGCTGGTCGTAAAGACGGTGGTCCGTTTATGAGAAAAAACACAGTGCATTCACTTCGGGGATCGAGGATCGCTGCTGCCATTGTGACCGGAGTCCTCATTGGATGTGTCTTCGCCTTCTTGTTTCCTCACGGTCTCTTCTCCCGCAATCCCCCCAGTACTATTTACAGCCATCGAATGGCAAAATCAAATGCGCAGGTTGGTCCTTGTGAATCATCCGAAAGGTTCAACATGTTGAAGTCAGAGTTTGTAGCCCTTTCGGATAAAAATGCAGAGTTGAAGAAGCAGATTAGAGAATCAACTGAAAGGCTTCGGTTGGCAGAACAAAGGAAAGAGCATGCACAGAAACAAGTCTTGGTTTTGGGTGACCAACAGAGAGCTGGTCCTTTCGGCAGTGTTAAGGGTTTAAGAACAAACTCTCTTGTTATGCCTGATGCATCTGTCAACCCAAGATTGGCAAAGATACTGAAAAAGGTTTCCCCCAATCAAGAACTTATTGTTGCACTCGCAAATTCCAACGTGAAAGTCATGTTGGAGGTTTGGTTCACTAGCATCAAGAGAGTGGGTATACCCAATTACTTGGTTATAGCTTTGGATGAAGAAATCGCCAATTTCTGCCAATCAAATAGTGTTCCATTTTACAAGAGAAATCCGGATGAAGGTATTGATTCGGTTGGAAGGACTGGCGGAAACCATGCTGTCTCAGGACTGAAATTTCGTGTCTTGAGGGAGTTCTTACAGCTCGGTTATAGTGTTCTTCTCTCAGATGTCGATATAGTTTACTTGCAAAATCCTTTTAATTATCTTTATCGGGATTCGGATGTGGAGTCTATGAGTGATGGTCATGACAATACGACAGCTTATGGTTACGATGATGTTTTTGATGAACCTTCGATGGGTTGGGCTCGTTATGCTCACTCAATGAGGATATGGGTTTATAATTCTGGATTTTTTTACATAAGGGCAACGATCCCGTCCATTGAACTTTTAGATCGTGTGGCTGATCGGCTTTTTCATGAGCCTAATTCTTGGGACCAGGCGGTTTTCAATGAGGTGCTGTTTTTCCCTTCACATCCTGGGTATGATGGGCTTCATGCCTCTAGGAGAACTATGGATTTATATCTCTTTATGAACAGCAAGGTACTCTTCAAGACTGTTAGGAAAGATGCTGAGCTGAGAAAGCTCAAACCGGTAGTCATTCATGTAAATTACCAGCCCGATAAGCTTCCAAGAATGAAAGCTATTGTGGATTACTATGTTAATGGCAAAAAAGATGCGTTACAACCCTTCCCTGATGGTTCAATTTGGCTGAAATCTCCCAGTGGGAATGGGCATGTATTAAACGCTATGCTGGAAAAC

Network for GWHGAAZE030013

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03407.17	Nucleotid_trans	190	409	2.40E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20783	RRA	Other types of O-glycan biosynthesis	map00514

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.139
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.116
	SRR3591710	White floral bud	0.052
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	3.393
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.684
	SRR8316896	Juvenile bud stage	6.934
	SRR8316897	Juvenile bud stage	1.714
	SRR8316894	Third green stage	2.639
	SRR8316900	Third green stage	5.617
	SRR8316901	Third green stage	7.473
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.026
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.817
	SRR6706287	Light intensity 50%	1.580
	SRR6706288	Light intensity 20%	1.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.361
	CNS0095593	Slightly white alabastrum(diploid) 2	6.978
	CNS0095594	Slightly white alabastrum(diploid) 3	16.349
	CNS0095595	Whole white alabastrum(diploid) 2	9.141
	CNS0095596	Whole white alabastrum(diploid) 3	13.757
	CNS0095597	Whole white alabastrum(diploid) 4	7.369
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.191
	CNS0095600	Silvery flower (diploied) 3	0.095
	CNS0095601	Golden flower (diploid) 1	0.042
	CNS0095602	Golden flower (diploid) 2	0.047
	CNS0095603	Golden flower (diploid) 3	0.130
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.116
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.342
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.074
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.562
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.075
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.261
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.053
	CNS0095612	Silvery flower (diploied) 3	0.189
	CNS0095613	Golden flower (tetraploid) 1	0.022
	CNS0095614	Golden flower (tetraploid) 2	0.088
	CNS0095615	Golden flower (tetraploid) 3	0.102
CRA001975	CRR073297	Stem 1	2.874
	CRR073298	Stem 2	3.692
	CRR073299	Stem 3	1.977
	CRR073300	Leaf 1	2.696
	CRR073301	Leaf 2	4.143
	CRR073302	Leaf 3	4.150
	CRR073303	Juvenile bud 1	0.348
	CRR073304	Juvenile bud 2	0.401
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.148
	CRR073307	Third green 2	0.205
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.010
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.149
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.062
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.020
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000