Gene detail

Detail information of GWHGAAZE030073

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092822.1	0	PREDICTED: probable receptor-like protein kinase At4g39110 [Sesamum indicum]
COG	YP_008151634.1	7E-24	hypothetical protein SCE1572_26190
Swissprot	tr\|Q9T020\|Y4391_ARATH	0	Probable receptor-like protein kinase At4g39110 (Precursor)
trEMBL	tr\|A0A068TNT0\|A0A068TNT0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97018.1}
TAIR10	AT4G39110.1	3E-178	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37736393	37739354	+
GWHAAZE00000009	mRNA	37736393	37739354	+
GWHAAZE00000009	exon	37736393	37737396	+
GWHAAZE00000009	exon	37737696	37738060	+
GWHAAZE00000009	exon	37738423	37739354	+
GWHAAZE00000009	CDS	37736393	37737396	+
GWHAAZE00000009	CDS	37737696	37738060	+
GWHAAZE00000009	CDS	37738423	37739354	+

Transcript Sequence
>GWHTAAZE030107 ATGGAAAGGATACCTAGACGTCGACCTCCTTCGCCTCCTCCTCTTCGTTTTAGGTCATCTTTTTCATCTTCACCGATGGCGATCCCTCTATTCTTTCTCTTCTCTTTTTACCTCTTCACCACTGCAACCTCCGGTCCCTCCCCCAAAGCCGATGAAACCTTTGCCCCACAAGACAACTACCTCCTCGATTGTGGCTCCTCCTCTCAAACCACCTTACCAGATAAGAGAGTATTTATGTCTGATCAAAACTCGACCAAATTCTTTAACTACGCTGGCCGAGATATTCAAGTTTCTGTAGAGTCTGCTAAAGAAGTAACTAACCCAATCTATCTTAACGCCAAAGTTTTTGTATCCGAAGCCACTTATTCATTCCACATGGCTCGACCCGGATGGCATTGGATCCGCCTACACTTTTTCCCAGTTAACAACAACGAGTTTAATTTGCAGCAAGCAAAATTCACAGTCACTTCCGAAAGTATAGTCTTCTTACATGAATTCAGCATAAATGAAAACAAATGTGTAATGAAAGAGTACTTAGTCAATGTAACACATGAACGTTTCGCAATCAAATTTACACCAATTCAAGGCTCCTTCGCTTTCATCAATGCCATTGAAGTTGTTTCAGCCCCTGATGCACTTATCCCTGATTCGGGCTCTTCTCTCTTCCCCGTCGGACCGTTTTCCGGCCTATCCGAGTACTCCTACATGACGGAGTATCGCCTCAACATGGGTGGACCGGTCATTAAGCCGGGTGAGGACACCCTCGGCCGGACGTGGGACCCCGATCTGCCTTTTGTTAAGCCCGGATCACAGAATGTCTCCGTAGCTCCTAATGTAGTGAACTATCCGGAAGGAACATCGGTGTTGATCGCCCCGAGGAAAGTGTACTCAACCGCATCTCAAATGGGTGATGCTGGAATCTCGGCCCCAACTTCAACATCACATGGAGTTTTGAGATTGATACTTCATTTAGTTACTTCATCCGCCTCCATTTTTGCGACATCAGGGACGGTGGCAGCAGTGGGGTTCGCGATGATGTTCGGGGCTTTTGTTGGGTTAGGGGCAATGGCAGTGAAGTGGCAGAAGAGGCCTAAGGATTGGCAGAAGGACAGTAGCTTCTCGTCATGGTTATTGCCTCTTCATGCTGGAGATTCAAGCTATATGAGGAAGAACTCGTCGGGGAAGAGTACACATTCGTCGACGATGGGGTACGGAAAATACTTTTCGCTGTCGGAGTTGCAGGAAGCTACGAAGAATTGGGATCCAAATGCGATAATTGGAGTGGGAGGGTTTGGGAATGTTTATATTGGGGAGATTGATGATGGTACTAAAGTTGCAGTCAAGAGAGGCAACCCACAATCAGAACAAGGTATTAATGAATTCCAGACGGAGATTCAAATGTTATCAAAGCTTCGTCACCGGCATTTAGTGTCACTAATTGGCTACTGCGAAGAAAACCAAGAAATGATATTGGTTTACGAGTTCATGTCAAACGGACCTCTTAGGGACCATTTATACGGTGGTAAGGACTTGCCCTCCCTTTCCTGGAAGCAAAGGCTCGAAATATGCATTGGGGCGGCCCGTGGTCTACATTACCTTCACACGGGCGCATCCCAAGGCATCATCCACCGTGATGTAAAAAGCACGAACATTCTACTGGACGACAACTTTGTAGCCAAAATGGCTGATTTCGGGCTCTCCAAGGATGCGCCAACCACTGAGGGTCAAACCCACGTGAGCACAGCGGTTAAGGGCAGCTTCGGATACCTGGACCCCGAGTACTTCCGGAAGCAACAGTTGACTGACAAGTCTGATGTGTACTCATTCGGGGTGGTGATGCTCGAGGTCTTATGTGCAAGACCGGCTATTAACCCGGCTCTGCCAAGAGAACAAGTGAACTTAGCCGAGTGGGCAATGCAGTGGAAACGAAAGGGTCTAATTGACAAGATCATTGACCCCACCTTAAACGGTGCCATTAACCCAGAGTCGCTAAAGAAGTTCACTGAGGCTGCAGAGAAGTGCTTGGCCGATTATGGGGTCGATAGGCCCTCAATGGGCGACGTTTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGGCCTCATTGCAAGGAAAGACGGATGAGGAAAATAAAGCAGGGGCACCACCTTCTCCTAGCCCTAGCCCAGCCCCAGCACTACCGACCGCTCCAGCATCTGCTCCTGCAGCTACTACTCCTGTCCCGGCTCAGGGTCAAGGGATGAATGAACACTCTGGGACAGCAATGTTTGCCCAATTCGCAGAGCTAAATGGGCGATAA

Network for GWHGAAZE030073

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	62	306	1.20E-21
PF07714.18	PK_Tyr_Ser-Thr	425	621	1.50E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.399
	SRR3591706	second leaf	0.107
	SRR3591707	mature leaf	0.279
	SRR3591708	Shoot apex	0.627
	SRR3591709	Stem	3.195
	SRR3591710	White floral bud	516.731
	SRR3591711	White flower	26.451
	SRR3591712	Green floral bud	396.803
	SRR3591713	Yellow flower	17.273
SRP173429	SRR8316895	Juvenile bud stage	2.072
	SRR8316896	Juvenile bud stage	26.746
	SRR8316897	Juvenile bud stage	21.095
	SRR8316894	Third green stage	17.877
	SRR8316900	Third green stage	150.352
	SRR8316901	Third green stage	128.192
	SRR8316898	Complete white stage	0.151
	SRR8316899	Complete white stage	1.461
	SRR8316903	Complete white stage	0.433
	SRR8316902	Silver flowering stage	3.600
	SRR8316904	Silver flowering stage	9.984
	SRR8316905	Silver flowering stage	2.548
	SRR8316906	Gold flowering stage	1.512
	SRR8316907	Gold flowering stage	0.543
	SRR8316908	Gold flowering stage	0.276
SRP132670	SRR6706286	Control	126.323
	SRR6706287	Light intensity 50%	134.313
	SRR6706288	Light intensity 20%	118.541
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	85.938
	CNS0095593	Slightly white alabastrum(diploid) 2	80.000
	CNS0095594	Slightly white alabastrum(diploid) 3	86.095
	CNS0095595	Whole white alabastrum(diploid) 2	364.081
	CNS0095596	Whole white alabastrum(diploid) 3	396.682
	CNS0095597	Whole white alabastrum(diploid) 4	570.752
	CNS0095598	Silvery flower (diploied) 1	14.385
	CNS0095599	Silvery flower (diploied) 2	65.277
	CNS0095600	Silvery flower (diploied) 3	12.857
	CNS0095601	Golden flower (diploid) 1	18.833
	CNS0095602	Golden flower (diploid) 2	9.457
	CNS0095603	Golden flower (diploid) 3	9.938
	CNS0095604	Slightly white alabastrum(tetraploid) 1	283.391
	CNS0095605	Slightly white alabastrum(tetraploid) 2	322.768
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.629
	CNS0095607	Whole white alabastrum(tetraploid) 1	692.331
	CNS0095608	Whole white alabastrum(tetraploid) 2	853.261
	CNS0095609	Whole white alabastrum(tetraploid) 3	406.763
	CNS0095610	Silvery flower (diploied) 1	11.226
	CNS0095611	Silvery flower (diploied) 2	42.692
	CNS0095612	Silvery flower (diploied) 3	122.356
	CNS0095613	Golden flower (tetraploid) 1	11.349
	CNS0095614	Golden flower (tetraploid) 2	3.118
	CNS0095615	Golden flower (tetraploid) 3	41.190
CRA001975	CRR073297	Stem 1	25.609
	CRR073298	Stem 2	29.166
	CRR073299	Stem 3	14.541
	CRR073300	Leaf 1	224.001
	CRR073301	Leaf 2	136.841
	CRR073302	Leaf 3	64.756
	CRR073303	Juvenile bud 1	197.738
	CRR073304	Juvenile bud 2	128.405
	CRR073305	Juvenile bud 3	24.810
	CRR073306	Third green 1	88.307
	CRR073307	Third green 2	85.477
	CRR073308	Third green 3	85.386
	CRR073309	Second white 1	2.999
	CRR073310	Second white 2	18.318
	CRR073311	Second white 3	21.886
	CRR073312	Silver flowering 1	107.853
	CRR073313	Silver flowering 2	123.295
	CRR073314	Silver flowering 3	60.128
	CRR073315	Gold flowering 1	64.036
	CRR073316	Gold flowering 2	21.057
	CRR073317	Gold flowering 3	12.319
	CRR073318	Tawny withering 1	93.993
	CRR073319	Tawny withering 2	85.059
	CRR073320	Tawny withering 3	82.408