Gene detail

Detail information of GWHGAAZE030094

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AED99863.1	0	squalene synthase [Panax quinquefolius]
COG	YP_004346033.1	1E-81	farnesyl-diphosphate farnesyltransferase
Swissprot	tr\|P53800\|FDFT_NICBE	0	Squalene synthase
trEMBL	tr\|F4YF86\|F4YF86_PANQU	0	Squalene synthase {ECO:0000313\|EMBL:AED99863.1}
TAIR10	AT4G34640.1	1E-174	squalene synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	38198496	38204424	+
GWHAAZE00000009	mRNA	38198496	38204424	+
GWHAAZE00000009	exon	38198496	38198555	+
GWHAAZE00000009	exon	38198730	38198934	+
GWHAAZE00000009	exon	38199487	38199529	+
GWHAAZE00000009	exon	38201895	38201984	+
GWHAAZE00000009	exon	38202427	38202502	+
GWHAAZE00000009	exon	38203004	38203073	+
GWHAAZE00000009	exon	38203429	38203572	+
GWHAAZE00000009	exon	38203677	38203781	+
GWHAAZE00000009	exon	38203901	38204047	+
GWHAAZE00000009	exon	38204164	38204239	+
GWHAAZE00000009	exon	38204327	38204424	+
GWHAAZE00000009	five_prime_UTR	38198496	38198555	+
GWHAAZE00000009	five_prime_UTR	38198730	38198739	+
GWHAAZE00000009	CDS	38198740	38198934	+
GWHAAZE00000009	CDS	38199487	38199529	+
GWHAAZE00000009	CDS	38201895	38201984	+
GWHAAZE00000009	CDS	38202427	38202502	+
GWHAAZE00000009	CDS	38203004	38203073	+
GWHAAZE00000009	CDS	38203429	38203572	+
GWHAAZE00000009	CDS	38203677	38203781	+
GWHAAZE00000009	CDS	38203901	38204047	+
GWHAAZE00000009	CDS	38204164	38204239	+
GWHAAZE00000009	CDS	38204327	38204424	+

Transcript Sequence
>GWHTAAZE030128 CTCGTCTTCATTCAAATCACACCAATACCGCACCTCATAATATTAAATTCAAGTCCCCAGAGGATCAAATATGGGGAGTTTGGGAGCGATTTTGAAGAATCCGGATGATTTCTATCCATTGTTGAAGCTGAAAATGGCGGCAAGGCATGCGGAGAAGCAGATCCCTCCGGAGCCGCACTGGGCGTTCTGTTACTCTATGCTCCACAAAGTCTCTCGCAGTTTTGGCCTCGTCATTCAACAGCTCGGCACCGAGCTTCGTGATGCGGTATGCATTTTTTATTTGGTTCTTCGTGCCCTCGACACTGTTGAGGATGATACAAGCATAGCTACAGAGGTGAAAGTACCAATTCTCATGGCTTTTCATCGTCACATATACGAGCATGACTGGCACTTCGCATGTGGTACAAAGGAATACAAAGTTCTCATGGATCAGTTCCATCATGTTAATACTGCTTTTCTGGAGCTTGGAAAGGGCTATCAGGAGGCAATTGAAGATATTACTATGAGAATGGGAGCAGGAATGGCAAAGTTTATATGCAAGGAGGTTGAAACAATTGAAGATTACGATGAATATTGTCATTATGTAGCAGGGCTTGTTGGATTAGGCTTGTCAAAGCTCTTCCATGCCTCTGGGGCAGAGAAATTGGCTCTAGATTCTCTCTCCAATTCAATGGGTCTATTTCTTCAGAAAGCAAATATTATTCGAGATTATCTCGAGGACATAAATGAGATACCAAAGTCACGCATGTTTTGGCCTCGCCAGATTTGGAGTAAATATGTCAACAAGCTTGAGGACTTAAAATATGAGGAAAACTCAGTAAAGGCAGTGCAATGCTTGAATGACATGGTCACAAATGCTTTGATACACGTGGAGGATTGCCTTAAGTACATGTCCGATTTGCGAGATCCTGCTAACTTCCGTTTCTGTGCTATTCCACAGATAATGGCAATTGGGACACTAGCTTTATGCTATAATAATATTGAAGTCTTCAGAGGGGTAGTGAAAATGAGGCGTGGTCTTACCGCTAAAATTATAGACCGAACTAAAACAATGTCGGATGTCTATGGAGCTTTCTTCGATTTCTCTTCTCTGTTGAAGTCCAAGGTACATTGA

Network for GWHGAAZE030094

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00494.20	SQS_PSY	45	315	5.80E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00801	FDFT1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100
		Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0008610	biological_process	lipid biosynthetic process
GO:0006696	biological_process	ergosterol biosynthetic process
GO:0009058	biological_process	biosynthetic process
GO:0016021	cellular_component	integral component of membrane
GO:0016765	molecular_function	transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0004310	molecular_function	farnesyl-diphosphate farnesyltransferase activity
GO:0051996	molecular_function	squalene synthase activity
GO:0016740	molecular_function	transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.885
	SRR3591706	second leaf	71.329
	SRR3591707	mature leaf	70.395
	SRR3591708	Shoot apex	51.616
	SRR3591709	Stem	34.789
	SRR3591710	White floral bud	39.325
	SRR3591711	White flower	30.622
	SRR3591712	Green floral bud	47.092
	SRR3591713	Yellow flower	45.450
SRP173429	SRR8316895	Juvenile bud stage	31.433
	SRR8316896	Juvenile bud stage	44.964
	SRR8316897	Juvenile bud stage	21.572
	SRR8316894	Third green stage	20.766
	SRR8316900	Third green stage	62.128
	SRR8316901	Third green stage	62.852
	SRR8316898	Complete white stage	45.452
	SRR8316899	Complete white stage	67.041
	SRR8316903	Complete white stage	63.095
	SRR8316902	Silver flowering stage	18.468
	SRR8316904	Silver flowering stage	33.579
	SRR8316905	Silver flowering stage	12.925
	SRR8316906	Gold flowering stage	62.762
	SRR8316907	Gold flowering stage	52.580
	SRR8316908	Gold flowering stage	63.480
SRP132670	SRR6706286	Control	49.447
	SRR6706287	Light intensity 50%	48.110
	SRR6706288	Light intensity 20%	48.297
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.641
	CNS0095593	Slightly white alabastrum(diploid) 2	30.400
	CNS0095594	Slightly white alabastrum(diploid) 3	26.765
	CNS0095595	Whole white alabastrum(diploid) 2	28.998
	CNS0095596	Whole white alabastrum(diploid) 3	29.425
	CNS0095597	Whole white alabastrum(diploid) 4	29.486
	CNS0095598	Silvery flower (diploied) 1	38.340
	CNS0095599	Silvery flower (diploied) 2	45.490
	CNS0095600	Silvery flower (diploied) 3	74.603
	CNS0095601	Golden flower (diploid) 1	54.550
	CNS0095602	Golden flower (diploid) 2	108.535
	CNS0095603	Golden flower (diploid) 3	102.988
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.846
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.383
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.453
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.123
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.179
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.308
	CNS0095610	Silvery flower (diploied) 1	78.639
	CNS0095611	Silvery flower (diploied) 2	65.263
	CNS0095612	Silvery flower (diploied) 3	46.863
	CNS0095613	Golden flower (tetraploid) 1	72.599
	CNS0095614	Golden flower (tetraploid) 2	106.844
	CNS0095615	Golden flower (tetraploid) 3	200.980
CRA001975	CRR073297	Stem 1	31.877
	CRR073298	Stem 2	28.451
	CRR073299	Stem 3	25.749
	CRR073300	Leaf 1	36.175
	CRR073301	Leaf 2	31.816
	CRR073302	Leaf 3	36.862
	CRR073303	Juvenile bud 1	32.116
	CRR073304	Juvenile bud 2	41.167
	CRR073305	Juvenile bud 3	32.144
	CRR073306	Third green 1	18.516
	CRR073307	Third green 2	18.609
	CRR073308	Third green 3	16.858
	CRR073309	Second white 1	10.762
	CRR073310	Second white 2	15.570
	CRR073311	Second white 3	14.723
	CRR073312	Silver flowering 1	27.043
	CRR073313	Silver flowering 2	35.044
	CRR073314	Silver flowering 3	53.533
	CRR073315	Gold flowering 1	18.831
	CRR073316	Gold flowering 2	33.684
	CRR073317	Gold flowering 3	21.446
	CRR073318	Tawny withering 1	22.317
	CRR073319	Tawny withering 2	32.756
	CRR073320	Tawny withering 3	14.837