Gene detail

Detail information of GWHGAAZE030191

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001266008.1	1.5195E-133	rac-like GTP-binding protein RAC1-like [Cicer arietinum]
COG	YP_003319433.1	1E-12	small GTP-binding protein
Swissprot	tr\|Q38912\|RAC3_ARATH	3E-127	Rac-like GTP-binding protein ARAC3 (Precursor)
trEMBL	tr\|Q9SXT7\|Q9SXT7_CICAR	6E-134	Rac-type small GTP-binding protein {ECO:0000313\|EMBL:BAA76424.1}
TAIR10	AT4G35020.3	1E-99	RAC-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	39314199	39318425	+
GWHAAZE00000009	mRNA	39314199	39318425	+
GWHAAZE00000009	exon	39314199	39314297	+
GWHAAZE00000009	exon	39316406	39316493	+
GWHAAZE00000009	exon	39316587	39316696	+
GWHAAZE00000009	exon	39316840	39316903	+
GWHAAZE00000009	exon	39317645	39317709	+
GWHAAZE00000009	exon	39318162	39318227	+
GWHAAZE00000009	exon	39318321	39318425	+
GWHAAZE00000009	CDS	39314199	39314297	+
GWHAAZE00000009	CDS	39316406	39316493	+
GWHAAZE00000009	CDS	39316587	39316696	+
GWHAAZE00000009	CDS	39316840	39316903	+
GWHAAZE00000009	CDS	39317645	39317709	+
GWHAAZE00000009	CDS	39318162	39318227	+
GWHAAZE00000009	CDS	39318321	39318425	+

Transcript Sequence
>GWHTAAZE030225 ATGAGCGGGTCTAGATTCATAAAGTGCGTAACCGTCGGCGATGGAGCTGTTGGTAAAACTTGTATGCTAATCTCCTACACCAGCAACACCTTTCCCACTGATTATGTGCCGACTGTGTTTGACAATTTTAGTGCAAATGTGGTAGTGGATGGGAGCACTATTAATCTTGGTTTATGGGATACAGCAGGTCAAGAGGATTACAACAGATTAAGACCTTTGAGCTACCGTGGGGCTGATGTATTTATACTCGCGTTTTCTCTGATTAGCAAGGCCAGTTATGAGAATGTCTCCAAGAAGTGGATTCCTGAATTGAGGCATTATGCACCTGGGGTTCCAATAATTCTTGTTGGAACTAAGCTTGATCTCCGGGATGATGAACAGTTCTTTATGGACCATCCCAGTGCAGTGCCCATTACTACAGCTCAGGGAGAGGAGTTGCGAAAGCTGATTGGAGCTCCGGCTTACATTGAATGTAGTTCAAAAACACAGCAGAACGTGAAGGCTGTTTTTGATGCGGCCATTAAGGTAGTTCTGCATCCACCAAAGCAGAAGAAGAAAAAGAAGAGAAAGGGACACAATGCTTGCAGTATATTGTGA

Network for GWHGAAZE030191

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	8	178	4.10E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04392	RAC1	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway	map04010
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		PI3K-Akt signaling pathway	map04151
		Phagosome	map04145
		Focal adhesion	map04510
		Adherens junction	map04520
		Tight junction	map04530
		Regulation of actin cytoskeleton	map04810
		Toll-like receptor signaling pathway	map04620
		Natural killer cell mediated cytotoxicity	map04650
		B cell receptor signaling pathway	map04662
		Fc epsilon RI signaling pathway	map04664
		Fc gamma R-mediated phagocytosis	map04666
		Leukocyte transendothelial migration	map04670
		Chemokine signaling pathway	map04062
		Pancreatic secretion	map04972
		Neurotrophin signaling pathway	map04722
		Axon guidance	map04360
		Axon regeneration	map04361
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0007264	biological_process	small GTPase mediated signal transduction
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	117.672
	SRR3591706	second leaf	61.926
	SRR3591707	mature leaf	37.545
	SRR3591708	Shoot apex	110.189
	SRR3591709	Stem	100.322
	SRR3591710	White floral bud	119.364
	SRR3591711	White flower	92.620
	SRR3591712	Green floral bud	110.478
	SRR3591713	Yellow flower	79.805
SRP173429	SRR8316895	Juvenile bud stage	56.060
	SRR8316896	Juvenile bud stage	72.738
	SRR8316897	Juvenile bud stage	33.314
	SRR8316894	Third green stage	35.880
	SRR8316900	Third green stage	95.494
	SRR8316901	Third green stage	99.844
	SRR8316898	Complete white stage	59.736
	SRR8316899	Complete white stage	139.339
	SRR8316903	Complete white stage	92.359
	SRR8316902	Silver flowering stage	45.600
	SRR8316904	Silver flowering stage	56.804
	SRR8316905	Silver flowering stage	26.881
	SRR8316906	Gold flowering stage	99.538
	SRR8316907	Gold flowering stage	94.132
	SRR8316908	Gold flowering stage	84.702
SRP132670	SRR6706286	Control	177.286
	SRR6706287	Light intensity 50%	185.253
	SRR6706288	Light intensity 20%	196.752
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	85.373
	CNS0095593	Slightly white alabastrum(diploid) 2	94.756
	CNS0095594	Slightly white alabastrum(diploid) 3	80.311
	CNS0095595	Whole white alabastrum(diploid) 2	70.011
	CNS0095596	Whole white alabastrum(diploid) 3	69.299
	CNS0095597	Whole white alabastrum(diploid) 4	74.685
	CNS0095598	Silvery flower (diploied) 1	78.564
	CNS0095599	Silvery flower (diploied) 2	85.995
	CNS0095600	Silvery flower (diploied) 3	105.250
	CNS0095601	Golden flower (diploid) 1	77.762
	CNS0095602	Golden flower (diploid) 2	104.553
	CNS0095603	Golden flower (diploid) 3	97.899
	CNS0095604	Slightly white alabastrum(tetraploid) 1	81.320
	CNS0095605	Slightly white alabastrum(tetraploid) 2	73.663
	CNS0095606	Slightly white alabastrum(tetraploid) 3	152.306
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.583
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.093
	CNS0095609	Whole white alabastrum(tetraploid) 3	95.381
	CNS0095610	Silvery flower (diploied) 1	93.162
	CNS0095611	Silvery flower (diploied) 2	88.021
	CNS0095612	Silvery flower (diploied) 3	92.352
	CNS0095613	Golden flower (tetraploid) 1	99.930
	CNS0095614	Golden flower (tetraploid) 2	90.212
	CNS0095615	Golden flower (tetraploid) 3	103.805
CRA001975	CRR073297	Stem 1	84.538
	CRR073298	Stem 2	81.934
	CRR073299	Stem 3	73.054
	CRR073300	Leaf 1	88.252
	CRR073301	Leaf 2	76.905
	CRR073302	Leaf 3	92.790
	CRR073303	Juvenile bud 1	84.792
	CRR073304	Juvenile bud 2	90.890
	CRR073305	Juvenile bud 3	65.367
	CRR073306	Third green 1	99.311
	CRR073307	Third green 2	95.395
	CRR073308	Third green 3	97.641
	CRR073309	Second white 1	38.975
	CRR073310	Second white 2	43.461
	CRR073311	Second white 3	31.249
	CRR073312	Silver flowering 1	24.292
	CRR073313	Silver flowering 2	26.386
	CRR073314	Silver flowering 3	25.092
	CRR073315	Gold flowering 1	45.608
	CRR073316	Gold flowering 2	53.371
	CRR073317	Gold flowering 3	35.774
	CRR073318	Tawny withering 1	57.371
	CRR073319	Tawny withering 2	63.289
	CRR073320	Tawny withering 3	66.464