Gene detail

Detail information of GWHGAAZE030244

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002306223.1	0	kinase family protein [Populus trichocarpa]
COG	YP_828710.1	0.00000005	serine/threonine protein kinase
Swissprot	tr\|Q944A7\|Y4523_ARATH	0	Probable serine/threonine-protein kinase At4g35230
trEMBL	tr\|B9H1Q4\|B9H1Q4_POPTR	0	Kinase family protein {ECO:0000313\|EMBL:EEE86734.1}
TAIR10	AT4G35230.1	0	BR-signaling kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40430030	40435636	-
GWHAAZE00000009	mRNA	40430030	40435636	-
GWHAAZE00000009	exon	40430030	40430284	-
GWHAAZE00000009	exon	40431044	40431157	-
GWHAAZE00000009	exon	40431254	40431418	-
GWHAAZE00000009	exon	40432128	40432316	-
GWHAAZE00000009	exon	40433126	40433211	-
GWHAAZE00000009	exon	40433405	40433510	-
GWHAAZE00000009	exon	40433807	40433940	-
GWHAAZE00000009	exon	40434898	40435033	-
GWHAAZE00000009	exon	40435289	40435636	-
GWHAAZE00000009	CDS	40435289	40435636	-
GWHAAZE00000009	CDS	40434898	40435033	-
GWHAAZE00000009	CDS	40433807	40433940	-
GWHAAZE00000009	CDS	40433405	40433510	-
GWHAAZE00000009	CDS	40433126	40433211	-
GWHAAZE00000009	CDS	40432128	40432316	-
GWHAAZE00000009	CDS	40431254	40431418	-
GWHAAZE00000009	CDS	40431044	40431157	-
GWHAAZE00000009	CDS	40430030	40430284	-

Transcript Sequence
>GWHTAAZE030278 ATGGGTTGCTGTGCATCGTCGTTTCAACCTGAGACGTACCCTGAAAAATCCCATAACCATCATCATCAGCAGCAACAGAACCACCGTACCCAAAACCCTCCTTTTGTCCACCCGCCGCTCTCGGGGGGTCCCGACCACCCGATACCCGCCACCGGAGTCCCTTCCTTCTTCGAGTTTTCCTTTGCTGACCTCAAAGCTGCCACCAACAATTTCAGCCCCGATTTTATAGTTTCCGAAAGTGGCGAAAATGCCCCAAATCTTGTCTATAAGGGCCGGCTCCAAAATCGCCGCTGGATTGCCGTTAAGAAATTCTCCAAATTAGCCTGGCCCGATCCCAAGCAGTTTGCTGAGGAGGCTTGGGGATTTGGGAAGTTGAGGCATAAAAGGATAGCAAATTTGATTGGGTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCTAATGATACTCTTGCTAAGCATTTATTTCACTGGGAAAATCAGACCATCGAATGGCCCATGCGATTAAGAGTAGCATTTCACATAGCTGAGGCCTTAGACTATTGTAGCAATGAAGGTCGTCAGCTGTACCATGACTTGAATGCTTATAGGATTCTCTTTGATGAGGACGGTGATCCCCGACTTTCATGTTTTGGCTTGATGAAGAATAGTAGGGATGGGAGAAGCTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAAGAAATGGAAGGGTCACCCCTGAAAGTGTTATATACAGCTTCGGTACTATCCTCTTGGATCTGATAAGTGGAAAGCACATCCCTCCAAGTCATGCTCTTGATATGATACGTGGCAAGAATATACTTCTGTTAATGGATTCACATTTGGAGGGGAAGTTTTCAACAGAGGAAGCAACAGTAGTAGTTGATCTCGCTTCAAAATGCTTGCAATATGAACCTAAAGAGCGACCTAGCACCAAGGACCTTGTTACCACACTTGCTCCATTACAAACCAAATCTGATGTTCCATCTCATGTAATGCTTGGAATTTCAAAGCACGAGGAAGCCCCGCCGACCCCACAGCGCCCTCTTTCACCATTGGGTGAGGCTTGTTCACGCACTGACCTCACAGCAATTCACCGGATCTTGGTTACCATGCACTATCGGGATGATGAAGGAACCAATGAGCTATCTTTCCAAGAGTGGACCCAACAGATGAGAGATATGCTAGAGGCAAGGAAGCGTGGGGACTTTGCTTTTCGTGATAAGGATTTTAAAACAGCCATCGATTGTTATTCTCAGTTCATAGATGTAGGAACAATGGTGTCCCCAACTGTATATGCACGTCGAAGCCTATGCTATCTCCTATGTGATCAACCTGACCATGCACTTCGAGACGCAATGCAAGCACAGTGCGTGTACCCGGACTGGCCAACGGCCTTCTACATGCAGTCAGTTGCCCTTGCCAAGTTGGATATGCACCAGGATGCCGTTGACATGTTAAACGAGGCTTCTGGGCTTGAAGAAAAGAGGCAAAAAAGCACTAGAGGATCTTAA

Network for GWHGAAZE030244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	88	325	1.10E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
K14500	BSK	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.511
	SRR3591706	second leaf	23.015
	SRR3591707	mature leaf	24.999
	SRR3591708	Shoot apex	39.527
	SRR3591709	Stem	48.201
	SRR3591710	White floral bud	27.191
	SRR3591711	White flower	39.549
	SRR3591712	Green floral bud	27.855
	SRR3591713	Yellow flower	19.433
SRP173429	SRR8316895	Juvenile bud stage	20.853
	SRR8316896	Juvenile bud stage	26.432
	SRR8316897	Juvenile bud stage	13.057
	SRR8316894	Third green stage	11.439
	SRR8316900	Third green stage	29.580
	SRR8316901	Third green stage	29.711
	SRR8316898	Complete white stage	10.750
	SRR8316899	Complete white stage	52.314
	SRR8316903	Complete white stage	23.317
	SRR8316902	Silver flowering stage	18.310
	SRR8316904	Silver flowering stage	23.944
	SRR8316905	Silver flowering stage	11.069
	SRR8316906	Gold flowering stage	36.098
	SRR8316907	Gold flowering stage	34.674
	SRR8316908	Gold flowering stage	43.608
SRP132670	SRR6706286	Control	36.427
	SRR6706287	Light intensity 50%	34.140
	SRR6706288	Light intensity 20%	33.248
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.509
	CNS0095593	Slightly white alabastrum(diploid) 2	17.519
	CNS0095594	Slightly white alabastrum(diploid) 3	17.915
	CNS0095595	Whole white alabastrum(diploid) 2	16.129
	CNS0095596	Whole white alabastrum(diploid) 3	12.744
	CNS0095597	Whole white alabastrum(diploid) 4	16.001
	CNS0095598	Silvery flower (diploied) 1	30.778
	CNS0095599	Silvery flower (diploied) 2	35.981
	CNS0095600	Silvery flower (diploied) 3	53.661
	CNS0095601	Golden flower (diploid) 1	28.535
	CNS0095602	Golden flower (diploid) 2	40.960
	CNS0095603	Golden flower (diploid) 3	38.503
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.830
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.012
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.690
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.933
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.290
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.977
	CNS0095610	Silvery flower (diploied) 1	51.503
	CNS0095611	Silvery flower (diploied) 2	46.237
	CNS0095612	Silvery flower (diploied) 3	24.007
	CNS0095613	Golden flower (tetraploid) 1	18.244
	CNS0095614	Golden flower (tetraploid) 2	30.600
	CNS0095615	Golden flower (tetraploid) 3	15.480
CRA001975	CRR073297	Stem 1	32.556
	CRR073298	Stem 2	31.318
	CRR073299	Stem 3	38.881
	CRR073300	Leaf 1	35.322
	CRR073301	Leaf 2	32.096
	CRR073302	Leaf 3	28.736
	CRR073303	Juvenile bud 1	37.244
	CRR073304	Juvenile bud 2	25.502
	CRR073305	Juvenile bud 3	45.172
	CRR073306	Third green 1	9.079
	CRR073307	Third green 2	6.698
	CRR073308	Third green 3	9.498
	CRR073309	Second white 1	15.948
	CRR073310	Second white 2	13.810
	CRR073311	Second white 3	10.730
	CRR073312	Silver flowering 1	19.573
	CRR073313	Silver flowering 2	30.035
	CRR073314	Silver flowering 3	25.608
	CRR073315	Gold flowering 1	27.674
	CRR073316	Gold flowering 2	34.812
	CRR073317	Gold flowering 3	29.640
	CRR073318	Tawny withering 1	31.494
	CRR073319	Tawny withering 2	24.030
	CRR073320	Tawny withering 3	32.953