Gene detail

Detail information of GWHGAAZE030291

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009593929.1	0	PREDICTED: probable pectate lyase 4 [Nicotiana tomentosiformis]
COG	YP_003300037.1	2E-21	Pectate lyase/Amb allergen
Swissprot	tr\|O65456\|PLY16_ARATH	7E-106	Probable pectate lyase 16 (Precursor)
trEMBL	tr\|A0A068TNL9\|A0A068TNL9_COFCA	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}
TAIR10	AT5G09280.1	8E-106	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	41086681	41088136	+
GWHAAZE00000009	mRNA	41086681	41088136	+
GWHAAZE00000009	exon	41086681	41087022	+
GWHAAZE00000009	exon	41087149	41087504	+
GWHAAZE00000009	exon	41087662	41087797	+
GWHAAZE00000009	exon	41087921	41088136	+
GWHAAZE00000009	CDS	41086681	41087022	+
GWHAAZE00000009	CDS	41087149	41087504	+
GWHAAZE00000009	CDS	41087662	41087797	+
GWHAAZE00000009	CDS	41087921	41088136	+

Transcript Sequence
>GWHTAAZE030325 ATGAACGCAATTGATAACTGCTGGAGATGGGACCCTAATTGGCGGAATCACAGGCAGCAACTCGCTACATGCTCAGTGGGCTACACCGGAAAAATGACCAATAACATTGGCCAAGATGTGATATTCTATGAGGTGACTGATCCCAGTGATAACGCAGTGAACCCCAAGCCAGGAACCCTAAGATACGGCGTGACTAGCATCAAACGAAAAGTTTGGATCACATTTCAAAGAGATATGCGCATTAAGCTCGAAAGACCACTTATTATCGGTAGTTTCACTGCCATTGATGGACGAGGCACTATCGTTCACATCGGAGCTGGTGGTTGTTTATTATTGAATAGGGTAACTAACGTAATCATCCATAGTTTGAGAATCCACGATTGCCAATCACAAGGACCAGCACCAGTGATGGGTCCAGACGCAAAGATAGTAAATTTGGGTAAGGTAGACGCAGATGCAATCAGAATGGTTACATCGTCAAAAATATGGATAGATCACAACACACTCTATAATTGTAAAGATGGTCTAATCGATGTCACCCGTGGGTCGACTGACATTACCATCTCAAACAATTGGTTCAGAAAACAGGACAAGGTTATGCTTTTGGGACATGACGATGGGTTCTTGAGAGACAAGAACATGAAGGTAACCGTAGCTTTTAACCATTTTGGTCCTGGTTGCCGTCAAAGGATGCCAAGGATCCGTCATGGGTATGCACACGTTGTCAACAATCTTTACCAAGGATGGGGTTTATATGCTATTGGAGGAAGCATGAATCCAAGCGTAAAGAGTCAAGCAAATCTTTTTATAGCATCTGAATCAGGGAACAAAGAGATAACATGGAGGCAAAGTGACAAGAAGGATGTGTCTTGGAATTTTCGGTCAGTGGAAGACGCGTTTGAAAATGGAGCCCATTTTGATCAAACAGGTGGTGGCAGAAGGCCAAACTATGCTCCGGAACAAGTATTTGAAGTGGCTGATGCAAGAACTGTTCGATCAATTATGCGAAACTCGGGTGCTTTGCGGTGTACTAAAATTTCCAGATGTTGA

Network for GWHGAAZE030291

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00544.20	Pectate_lyase_4	99	269	2.40E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01728	pel	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.086
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.063
	SRR8316897	Juvenile bud stage	0.005
	SRR8316894	Third green stage	0.039
	SRR8316900	Third green stage	0.162
	SRR8316901	Third green stage	0.207
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.098
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.143
	SRR8316905	Silver flowering stage	0.004
	SRR8316906	Gold flowering stage	0.076
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.004
SRP132670	SRR6706286	Control	0.024
	SRR6706287	Light intensity 50%	0.047
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.219
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.354
	CNS0095600	Silvery flower (diploied) 3	0.221
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.035
	CNS0095603	Golden flower (diploid) 3	0.129
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.014
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.115
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.107
	CNS0095612	Silvery flower (diploied) 3	0.428
	CNS0095613	Golden flower (tetraploid) 1	0.324
	CNS0095614	Golden flower (tetraploid) 2	0.181
	CNS0095615	Golden flower (tetraploid) 3	0.168
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.071
	CRR073305	Juvenile bud 3	0.090
	CRR073306	Third green 1	0.220
	CRR073307	Third green 2	0.634
	CRR073308	Third green 3	0.061
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.463
	CRR073313	Silver flowering 2	1.284
	CRR073314	Silver flowering 3	0.097
	CRR073315	Gold flowering 1	0.087
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.085
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.099