Gene detail

Detail information of GWHGAAZE030309

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98576.1	1.16271E-83	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q0WQQ1\|AGD15_ARATH	1E-59	Probable ADP-ribosylation factor GTPase-activating protein AGD15
trEMBL	tr\|A0A068TQP2\|A0A068TQP2_COFCA	4E-84	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98576.1}
TAIR10	AT3G17660.1	5E-50	ARF-GAP domain 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	41344403	41348436	+
GWHAAZE00000009	mRNA	41344403	41348436	+
GWHAAZE00000009	exon	41344403	41344503	+
GWHAAZE00000009	exon	41344713	41344803	+
GWHAAZE00000009	exon	41345221	41345275	+
GWHAAZE00000009	exon	41345655	41345745	+
GWHAAZE00000009	exon	41345846	41346011	+
GWHAAZE00000009	exon	41346727	41346910	+
GWHAAZE00000009	exon	41347082	41347145	+
GWHAAZE00000009	exon	41347283	41347373	+
GWHAAZE00000009	exon	41348263	41348436	+
GWHAAZE00000009	CDS	41344403	41344503	+
GWHAAZE00000009	CDS	41344713	41344803	+
GWHAAZE00000009	CDS	41345221	41345275	+
GWHAAZE00000009	CDS	41345655	41345745	+
GWHAAZE00000009	CDS	41345846	41346011	+
GWHAAZE00000009	CDS	41346727	41346910	+
GWHAAZE00000009	CDS	41347082	41347145	+
GWHAAZE00000009	CDS	41347283	41347373	+
GWHAAZE00000009	CDS	41348263	41348436	+

Transcript Sequence
>GWHTAAZE030343 ATGTTGAAGCTGACCATTGAATTTGTCCCTACTCCATTGTGGAGTAGCTGTATGGGATTTAGTATCTACATATGGCATGGGTTTGGAGATCGAGGAGCAAGGGCCCCTCGATGGGCAAGCGTGAACCTTGGAATATTTATATGCATGCAGTGTTCAGGAATACATCGGAGTCTTGGAGTACATATCTCAAAGGTAAGGTCTACGACTTTGGACACATGGCTACCGGAGCAGGTTACTTTCATGCAGGCTATGGGAAATGAGAAATCAAACTCTTACTGGGAAGCAGAATTGCCACCAAATTTTGACAGAGGCTCAATTGAACAATTTATCCGTGCCAAGTATGAGGAGAAAAAATGGGTTTCTCAGACCATGCCAAACCCAATTCACACATTAGGTGAAAGGAGATGTGACATTCCAAGGAAAGCAAGAAAATATTCTCTTGAGGAGGAGAGTATCACTGAACACATGTCACACGTTCCTCCTCCAGCAGCAAGACATCGTGCGGGTTCTTTAGATATGAATCATATGATGAACAATCTTATTATTTCACCTCCACCAAATATGCCAGAACATGATGCATCCACAAAGAAGGTTGATGGTGCTACGGATCTTTTCAGTTTGCTCTATGCTGCAGATGTAAAGCATGATCGTGTTGTTGTACCTCCATCCCGCTGGGAAACTTTTGAATGTTTGCAGTGTGGAATAGAGGCTCTAGTTAAACAAAAGCGGAAAGATCAGATCTCGACTACAAGGCAGGTCAAGCCCCGCTATAGCGATCCTGATCCAAAACCGGTTCTGAATCCAGTATTTAGAATTGTAGAGTACTTTTGTTCAAGGAAGGAGCAAATCACGATTGAAGCTCTGGGAGTTGTGGAAGTGAGAGTCGACTGCCAACTCGATACACAAACACTGTTTACAGGACATGCGATTGGGAACTCAGATAAGAGGATGTATCAAGCTGTATATGGTCATTCGATTTGGGTTTTTGATGAATCTGATACTCAACATGTTTCATAG

Network for GWHGAAZE030309

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.19	ArfGap	32	122	4.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12486	SMAP	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005096	molecular_function	GTPase activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.161
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.085
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.390
	SRR3591710	White floral bud	64.938
	SRR3591711	White flower	3.118
	SRR3591712	Green floral bud	53.063
	SRR3591713	Yellow flower	1.890
SRP173429	SRR8316895	Juvenile bud stage	4.877
	SRR8316896	Juvenile bud stage	16.110
	SRR8316897	Juvenile bud stage	7.945
	SRR8316894	Third green stage	8.818
	SRR8316900	Third green stage	39.325
	SRR8316901	Third green stage	38.645
	SRR8316898	Complete white stage	0.022
	SRR8316899	Complete white stage	0.677
	SRR8316903	Complete white stage	0.092
	SRR8316902	Silver flowering stage	1.017
	SRR8316904	Silver flowering stage	1.623
	SRR8316905	Silver flowering stage	0.515
	SRR8316906	Gold flowering stage	0.275
	SRR8316907	Gold flowering stage	0.206
	SRR8316908	Gold flowering stage	0.021
SRP132670	SRR6706286	Control	19.614
	SRR6706287	Light intensity 50%	20.172
	SRR6706288	Light intensity 20%	19.029
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.630
	CNS0095593	Slightly white alabastrum(diploid) 2	27.372
	CNS0095594	Slightly white alabastrum(diploid) 3	42.568
	CNS0095595	Whole white alabastrum(diploid) 2	76.287
	CNS0095596	Whole white alabastrum(diploid) 3	98.980
	CNS0095597	Whole white alabastrum(diploid) 4	111.869
	CNS0095598	Silvery flower (diploied) 1	2.892
	CNS0095599	Silvery flower (diploied) 2	10.945
	CNS0095600	Silvery flower (diploied) 3	3.334
	CNS0095601	Golden flower (diploid) 1	5.014
	CNS0095602	Golden flower (diploid) 2	2.313
	CNS0095603	Golden flower (diploid) 3	2.727
	CNS0095604	Slightly white alabastrum(tetraploid) 1	67.435
	CNS0095605	Slightly white alabastrum(tetraploid) 2	71.391
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.073
	CNS0095607	Whole white alabastrum(tetraploid) 1	135.900
	CNS0095608	Whole white alabastrum(tetraploid) 2	153.231
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.900
	CNS0095610	Silvery flower (diploied) 1	1.578
	CNS0095611	Silvery flower (diploied) 2	8.590
	CNS0095612	Silvery flower (diploied) 3	19.971
	CNS0095613	Golden flower (tetraploid) 1	3.868
	CNS0095614	Golden flower (tetraploid) 2	0.796
	CNS0095615	Golden flower (tetraploid) 3	11.031
CRA001975	CRR073297	Stem 1	4.635
	CRR073298	Stem 2	6.024
	CRR073299	Stem 3	2.214
	CRR073300	Leaf 1	28.379
	CRR073301	Leaf 2	12.625
	CRR073302	Leaf 3	7.921
	CRR073303	Juvenile bud 1	17.025
	CRR073304	Juvenile bud 2	10.886
	CRR073305	Juvenile bud 3	2.051
	CRR073306	Third green 1	6.136
	CRR073307	Third green 2	7.832
	CRR073308	Third green 3	9.458
	CRR073309	Second white 1	0.511
	CRR073310	Second white 2	1.811
	CRR073311	Second white 3	1.731
	CRR073312	Silver flowering 1	7.480
	CRR073313	Silver flowering 2	6.638
	CRR073314	Silver flowering 3	6.119
	CRR073315	Gold flowering 1	7.961
	CRR073316	Gold flowering 2	2.864
	CRR073317	Gold flowering 3	0.951
	CRR073318	Tawny withering 1	11.718
	CRR073319	Tawny withering 2	8.589
	CRR073320	Tawny withering 3	8.496