Detail information of GWHGAAZE030319


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010645766.18.4083E-102PREDICTED: calmodulin [Vitis vinifera]
COGYP_001866396.16E-38signal transduction protein
Swissprottr|P27161|CALM_SOLLC2E-103Calmodulin
trEMBLtr|A0A068TRR7|A0A068TRR7_COFCA3E-102Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO98639.1}
TAIR10AT2G27030.31E-77calmodulin 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4153951041543696+
GWHAAZE00000009mRNA4153951041543696+
GWHAAZE00000009exon4153951041539585+
GWHAAZE00000009exon4154228941542446+
GWHAAZE00000009exon4154284941542929+
GWHAAZE00000009exon4154303941543696+
GWHAAZE00000009CDS4153951041539585+
GWHAAZE00000009CDS4154228941542446+
GWHAAZE00000009CDS4154284941542929+
GWHAAZE00000009CDS4154303941543173+
GWHAAZE00000009three_prime_UTR4154317441543696+
Transcript Sequence

Network for GWHGAAZE030319

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13499.7EF-hand_712734.90E-15
PF13499.7EF-hand_7831467.60E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02183CALM Ras signaling pathway map04014
Rap1 signaling pathwaymap04015
MAPK signaling pathway - plantmap04016
Apelin signaling pathwaymap04371
Calcium signaling pathwaymap04020
Phosphatidylinositol signaling systemmap04070
cAMP signaling pathwaymap04024
cGMP-PKG signaling pathwaymap04022
Oocyte meiosismap04114
Cellular senescencemap04218
C-type lectin receptor signaling pathwaymap04625
Insulin signaling pathwaymap04910
Glucagon signaling pathwaymap04922
GnRH signaling pathwaymap04912
Estrogen signaling pathwaymap04915
Oxytocin signaling pathwaymap04921
Melanogenesismap04916
Renin secretionmap04924
Aldosterone synthesis and secretionmap04925
Adrenergic signaling in cardiomyocytesmap04261
Vascular smooth muscle contractionmap04270
Salivary secretionmap04970
Gastric acid secretionmap04971
Dopaminergic synapsemap04728
Long-term potentiationmap04720
Neurotrophin signaling pathwaymap04722
Phototransductionmap04744
Phototransduction - flymap04745
Olfactory transductionmap04740
Inflammatory mediator regulation of TRP channelsmap04750
Circadian entrainmentmap04713
Plant-pathogen interactionmap04626

Gene Ontology

GO term OntologyName
GO:0005509molecular_functioncalcium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf315.351
SRR3591706second leaf162.135
SRR3591707mature leaf106.902
SRR3591708Shoot apex251.554
SRR3591709Stem164.372
SRR3591710White floral bud153.309
SRR3591711White flower168.120
SRR3591712Green floral bud208.741
SRR3591713Yellow flower113.033
SRP173429 SRR8316895Juvenile bud stage 150.130
SRR8316896Juvenile bud stage 187.781
SRR8316897Juvenile bud stage 130.987
SRR8316894Third green stage 70.405
SRR8316900Third green stage 223.121
SRR8316901Third green stage 203.604
SRR8316898Complete white stage 67.857
SRR8316899Complete white stage 275.652
SRR8316903Complete white stage 105.637
SRR8316902Silver flowering stage62.068
SRR8316904Silver flowering stage75.155
SRR8316905Silver flowering stage42.607
SRR8316906Gold flowering stage 98.647
SRR8316907Gold flowering stage 92.510
SRR8316908Gold flowering stage 119.217
SRP132670SRR6706286Control147.382
SRR6706287Light intensity 50%158.103
SRR6706288Light intensity 20%172.988
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1242.445
CNS0095593Slightly white alabastrum(diploid) 2294.444
CNS0095594Slightly white alabastrum(diploid) 3203.024
CNS0095595Whole white alabastrum(diploid) 2196.159
CNS0095596Whole white alabastrum(diploid) 3154.162
CNS0095597Whole white alabastrum(diploid) 4155.181
CNS0095598Silvery flower (diploied) 1212.205
CNS0095599Silvery flower (diploied) 2179.878
CNS0095600Silvery flower (diploied) 3141.523
CNS0095601Golden flower (diploid) 1170.104
CNS0095602Golden flower (diploid) 2140.600
CNS0095603Golden flower (diploid) 3138.115
CNS0095604Slightly white alabastrum(tetraploid) 1127.525
CNS0095605Slightly white alabastrum(tetraploid) 2132.286
CNS0095606Slightly white alabastrum(tetraploid) 3202.614
CNS0095607Whole white alabastrum(tetraploid) 184.408
CNS0095608Whole white alabastrum(tetraploid) 288.529
CNS0095609Whole white alabastrum(tetraploid) 3120.806
CNS0095610Silvery flower (diploied) 189.996
CNS0095611Silvery flower (diploied) 284.366
CNS0095612Silvery flower (diploied) 379.267
CNS0095613Golden flower (tetraploid) 169.311
CNS0095614Golden flower (tetraploid) 277.317
CNS0095615Golden flower (tetraploid) 353.914
CRA001975CRR073297Stem 1204.055
CRR073298Stem 2195.223
CRR073299Stem 3197.638
CRR073300Leaf 1190.458
CRR073301Leaf 2244.441
CRR073302Leaf 3258.238
CRR073303Juvenile bud 1232.307
CRR073304Juvenile bud 2163.506
CRR073305Juvenile bud 3177.199
CRR073306Third green 161.085
CRR073307Third green 273.468
CRR073308Third green 372.784
CRR073309Second white 1136.724
CRR073310Second white 279.175
CRR073311Second white 363.376
CRR073312Silver flowering 181.667
CRR073313Silver flowering 2124.556
CRR073314Silver flowering 372.575
CRR073315Gold flowering 1200.820
CRR073316Gold flowering 2191.049
CRR073317Gold flowering 3171.289
CRR073318Tawny withering 1199.466
CRR073319Tawny withering 2207.441
CRR073320Tawny withering 3189.216