Gene detail

Detail information of GWHGAAZE030438

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG15042.1	0	Serine/threonine-protein kinase 16 [Gossypium arboreum]
COG	YP_004684743.1	1E-13	serine/threonine protein kinase
Swissprot	tr\|Q8L4H4\|NORK_MEDTR	0.000000003	Nodulation receptor kinase (Precursor)
trEMBL	tr\|B9RE79\|B9RE79_RICCO	0	Serine/threonine protein kinase, putative {ECO:0000313\|EMBL:EEF50687.1}
TAIR10	AT5G08160.1	6E-160	serine/threonine protein kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	43644108	43648602	+
GWHAAZE00000009	mRNA	43644108	43648602	+
GWHAAZE00000009	exon	43644108	43644378	+
GWHAAZE00000009	exon	43645424	43645566	+
GWHAAZE00000009	exon	43645923	43646066	+
GWHAAZE00000009	exon	43646735	43646920	+
GWHAAZE00000009	exon	43648138	43648262	+
GWHAAZE00000009	exon	43648377	43648602	+
GWHAAZE00000009	CDS	43644108	43644378	+
GWHAAZE00000009	CDS	43645424	43645566	+
GWHAAZE00000009	CDS	43645923	43646066	+
GWHAAZE00000009	CDS	43646735	43646920	+
GWHAAZE00000009	CDS	43648138	43648262	+
GWHAAZE00000009	CDS	43648377	43648602	+

Transcript Sequence
>GWHTAAZE030472 ATGGGATGCTCGTTTTCGGGATTGAACGCACTGTACGACAACGCGAACGGAGATGTGTGGATCAATGAGAATCGTTTTAGGATCGTTAGGCCCCTGGGCGAAGGTGCTTTCTCTTATGTATACCTCGTCAAGGAGGTTCTCAATGACCCCTCTGCCGGTGGCATTTCCACCAAACTCAAAGATCCTTCTCATCTCTCTAGTTAGTACTTCTCTCTTTTCTCTTTTATTTCATTCCAAATCATGAATGAATTCAGCTTGGTGATGTTAAAATGTGATGGAACTTATGCAATGAAGAAAGTTCTGATTCAAACTAATGAGCAGTTGGAAAGGGTGATGGAGGAGGTCCGCGTTACATCTCTGTTTAGCCATCCCAATCTGCTTCCTCTCCTTGATCATGCAATCATTGCTGTCAAGGCCTCACAAGAACTAACTTGGAAGCATGAAGCATACATGTTATTTCCAGTTCATTTGGATGGAACATTGGTGGACAGTGCTAATGCTATGAAAGCTAGGAAGGAGTATTTTTCTACTTCAGATGTCCTTCAAATATTTCATCAGCTTTGCTCAGGACTGAAGCACATGCACAGTTTTGATCCTCCATATGCACATAATGATGTCAAACCTGGTAATGTCGCTCTAACGCGTCGAAAAGGACAACCACCTCTTGCTATATTGATGGATTTTGGGAGTGCTCGTCCTGCCAGAAAGCAAATTCACTCTCGTTCAGAAGCACTGCAGCTCCAGGAATGGGCATCTGAGCACTGTTCAGCACCTTTCCGAGCTCCCGAATTGTGGGACTGTCCTAGCGATGCAGTTATTGACGAAAGAACTGATATTTGGTCATTAGGTTGCACTTTATATGCAATCATGTACGGTTCATCTCCGTTTGAGTATGCACTTGGGGAATCTGGAGGAAGCCTACAGCTGGCAATTGTAAATGTGCAGATAAAGTGGCCAACTGGGCCAAATCCTCCGTACCCAGAAGCACTTCACCAGTTTGTGACATGGATGCTCCAGCCCCAAGCCACTGTTCGACCTTGCATTGACGATATCGCCTTTCATGTTGACAAGTTGATCTCAAAGTTCTCCAAGTGA

Network for GWHGAAZE030438

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	91	352	4.80E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	NAK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.309
	SRR3591706	second leaf	9.960
	SRR3591707	mature leaf	4.709
	SRR3591708	Shoot apex	11.532
	SRR3591709	Stem	8.032
	SRR3591710	White floral bud	53.230
	SRR3591711	White flower	13.955
	SRR3591712	Green floral bud	63.966
	SRR3591713	Yellow flower	10.447
SRP173429	SRR8316895	Juvenile bud stage	18.528
	SRR8316896	Juvenile bud stage	30.409
	SRR8316897	Juvenile bud stage	14.119
	SRR8316894	Third green stage	14.728
	SRR8316900	Third green stage	71.830
	SRR8316901	Third green stage	65.765
	SRR8316898	Complete white stage	30.224
	SRR8316899	Complete white stage	69.700
	SRR8316903	Complete white stage	36.822
	SRR8316902	Silver flowering stage	12.734
	SRR8316904	Silver flowering stage	21.105
	SRR8316905	Silver flowering stage	7.777
	SRR8316906	Gold flowering stage	19.958
	SRR8316907	Gold flowering stage	19.180
	SRR8316908	Gold flowering stage	20.688
SRP132670	SRR6706286	Control	47.687
	SRR6706287	Light intensity 50%	51.012
	SRR6706288	Light intensity 20%	56.214
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.914
	CNS0095593	Slightly white alabastrum(diploid) 2	33.748
	CNS0095594	Slightly white alabastrum(diploid) 3	27.901
	CNS0095595	Whole white alabastrum(diploid) 2	42.015
	CNS0095596	Whole white alabastrum(diploid) 3	38.531
	CNS0095597	Whole white alabastrum(diploid) 4	40.071
	CNS0095598	Silvery flower (diploied) 1	12.854
	CNS0095599	Silvery flower (diploied) 2	15.733
	CNS0095600	Silvery flower (diploied) 3	29.705
	CNS0095601	Golden flower (diploid) 1	9.566
	CNS0095602	Golden flower (diploid) 2	12.226
	CNS0095603	Golden flower (diploid) 3	13.871
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.213
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.785
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.100
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.801
	CNS0095608	Whole white alabastrum(tetraploid) 2	69.259
	CNS0095609	Whole white alabastrum(tetraploid) 3	88.037
	CNS0095610	Silvery flower (diploied) 1	32.242
	CNS0095611	Silvery flower (diploied) 2	33.769
	CNS0095612	Silvery flower (diploied) 3	58.520
	CNS0095613	Golden flower (tetraploid) 1	12.217
	CNS0095614	Golden flower (tetraploid) 2	19.450
	CNS0095615	Golden flower (tetraploid) 3	15.430
CRA001975	CRR073297	Stem 1	45.980
	CRR073298	Stem 2	43.215
	CRR073299	Stem 3	45.075
	CRR073300	Leaf 1	103.564
	CRR073301	Leaf 2	88.028
	CRR073302	Leaf 3	112.468
	CRR073303	Juvenile bud 1	142.635
	CRR073304	Juvenile bud 2	138.523
	CRR073305	Juvenile bud 3	113.887
	CRR073306	Third green 1	100.158
	CRR073307	Third green 2	104.431
	CRR073308	Third green 3	88.995
	CRR073309	Second white 1	63.590
	CRR073310	Second white 2	56.266
	CRR073311	Second white 3	37.498
	CRR073312	Silver flowering 1	27.560
	CRR073313	Silver flowering 2	28.029
	CRR073314	Silver flowering 3	26.948
	CRR073315	Gold flowering 1	23.954
	CRR073316	Gold flowering 2	20.526
	CRR073317	Gold flowering 3	21.010
	CRR073318	Tawny withering 1	31.810
	CRR073319	Tawny withering 2	27.774
	CRR073320	Tawny withering 3	27.120