Gene detail

Detail information of GWHGAAZE030448

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267092.1	7.88124E-81	PREDICTED: dof zinc finger protein DOF5.4 [Vitis vinifera]
Swissprot	tr\|Q8LDR0\|DOF54_ARATH	2E-48	Dof zinc finger protein DOF5.4
trEMBL	tr\|F6GTE9\|F6GTE9_VITVI	3E-75	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43158.1}
TAIR10	AT5G60850.1	6E-28	OBF binding protein 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	43778885	43779598	+
GWHAAZE00000009	mRNA	43778885	43779598	+
GWHAAZE00000009	exon	43778885	43779598	+
GWHAAZE00000009	CDS	43778885	43779598	+

Transcript Sequence
>GWHTAAZE030482 ATGAGGCCGCCGCACAACCACCAGTCATTGAAGTGTCCCCGTTGCGACTCGATCAACACAAAGTTCTGCTATTACAACAACTACAATCTCTCTCAGCCTCGCCACTTCTGCAAAAGCTGCCGGAGGTACTGGACCAGAGGCGGCGTCCTCCGTACAGTCCCCGTCGGCGGCGGATGCCGGAAAACCAAGCGCTCCAAGGCCAAGTCTGCCTCCAACTCTCACAAATCGAATAATTCTCAGTCCAGCAGCGAGAGCTCCAGCCTCACTGCCGCAACCACGGTCTCGGAGGATTCGCCGGCATCTCCGTCGACGCTAATCAATTTTCAGAATCACGAATTATTCGTTTCTCAACCTGTAGATCCAATCTTCGATCCAATACCTGTTGTTGATCGTTCGATCGACGGCGGGATCTTCCCTGAGATTGGAAGCTTCACGAACCTGATGACGTCATCTAACGATTCGTCACTGCTAGGGTTTAACATTTCGCCTTGCAAGTTGAACCACGGGAAGGTTGAAGAGCAGGTATTGGATCCGACAGCTGAGATTGATTTATCGGGATGGGAGAACAGAACAACGGACGGAGATCTCGCAGCAGTGGATTGGCAAGCTGAGGGAGATCAGGGATTATTTGATCTCACGGGGACCTTTGATCAATCATACTGGAGTCAGGCCCAGTGGACTGATAACGATAATCCAATTAACTATTTTCGTTAG

Network for GWHGAAZE030448

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	8	64	1.60E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.358
	SRR3591706	second leaf	24.323
	SRR3591707	mature leaf	62.231
	SRR3591708	Shoot apex	16.483
	SRR3591709	Stem	26.426
	SRR3591710	White floral bud	30.017
	SRR3591711	White flower	19.966
	SRR3591712	Green floral bud	43.677
	SRR3591713	Yellow flower	7.034
SRP173429	SRR8316895	Juvenile bud stage	12.952
	SRR8316896	Juvenile bud stage	14.389
	SRR8316897	Juvenile bud stage	6.451
	SRR8316894	Third green stage	17.016
	SRR8316900	Third green stage	64.243
	SRR8316901	Third green stage	52.565
	SRR8316898	Complete white stage	28.872
	SRR8316899	Complete white stage	70.650
	SRR8316903	Complete white stage	35.202
	SRR8316902	Silver flowering stage	29.381
	SRR8316904	Silver flowering stage	21.290
	SRR8316905	Silver flowering stage	13.214
	SRR8316906	Gold flowering stage	37.547
	SRR8316907	Gold flowering stage	38.098
	SRR8316908	Gold flowering stage	43.448
SRP132670	SRR6706286	Control	72.092
	SRR6706287	Light intensity 50%	68.478
	SRR6706288	Light intensity 20%	71.838
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.670
	CNS0095593	Slightly white alabastrum(diploid) 2	32.456
	CNS0095594	Slightly white alabastrum(diploid) 3	25.908
	CNS0095595	Whole white alabastrum(diploid) 2	32.713
	CNS0095596	Whole white alabastrum(diploid) 3	36.434
	CNS0095597	Whole white alabastrum(diploid) 4	28.734
	CNS0095598	Silvery flower (diploied) 1	23.528
	CNS0095599	Silvery flower (diploied) 2	43.642
	CNS0095600	Silvery flower (diploied) 3	73.633
	CNS0095601	Golden flower (diploid) 1	29.344
	CNS0095602	Golden flower (diploid) 2	66.470
	CNS0095603	Golden flower (diploid) 3	60.777
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.391
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.980
	CNS0095606	Slightly white alabastrum(tetraploid) 3	78.300
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.928
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.297
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.044
	CNS0095610	Silvery flower (diploied) 1	46.974
	CNS0095611	Silvery flower (diploied) 2	57.743
	CNS0095612	Silvery flower (diploied) 3	18.386
	CNS0095613	Golden flower (tetraploid) 1	37.274
	CNS0095614	Golden flower (tetraploid) 2	47.677
	CNS0095615	Golden flower (tetraploid) 3	54.489
CRA001975	CRR073297	Stem 1	54.171
	CRR073298	Stem 2	63.539
	CRR073299	Stem 3	84.363
	CRR073300	Leaf 1	85.366
	CRR073301	Leaf 2	90.909
	CRR073302	Leaf 3	101.536
	CRR073303	Juvenile bud 1	95.193
	CRR073304	Juvenile bud 2	69.166
	CRR073305	Juvenile bud 3	85.074
	CRR073306	Third green 1	74.793
	CRR073307	Third green 2	82.098
	CRR073308	Third green 3	54.578
	CRR073309	Second white 1	38.457
	CRR073310	Second white 2	30.945
	CRR073311	Second white 3	17.115
	CRR073312	Silver flowering 1	20.839
	CRR073313	Silver flowering 2	23.080
	CRR073314	Silver flowering 3	23.636
	CRR073315	Gold flowering 1	16.728
	CRR073316	Gold flowering 2	16.115
	CRR073317	Gold flowering 3	18.318
	CRR073318	Tawny withering 1	15.450
	CRR073319	Tawny withering 2	4.932
	CRR073320	Tawny withering 3	9.440