Gene detail

Detail information of GWHGAAZE030612

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009615365.1	5.5123E-176	PREDICTED: aldose 1-epimerase [Nicotiana tomentosiformis]
COG	YP_003289764.1	3E-85	aldose 1-epimerase
trEMBL	tr\|M1BJA2\|M1BJA2_SOLTU	1E-172	Aldose 1-epimerase {ECO:0000256\|PIRNR:PIRNR005096}
TAIR10	AT3G47800.1	2E-122	Galactose mutarotase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46049636	46054845	+
GWHAAZE00000009	mRNA	46049636	46054845	+
GWHAAZE00000009	exon	46049636	46049694	+
GWHAAZE00000009	exon	46052434	46052531	+
GWHAAZE00000009	exon	46052686	46052735	+
GWHAAZE00000009	exon	46053666	46053792	+
GWHAAZE00000009	exon	46053907	46054005	+
GWHAAZE00000009	exon	46054211	46054845	+
GWHAAZE00000009	CDS	46049636	46049694	+
GWHAAZE00000009	CDS	46052434	46052531	+
GWHAAZE00000009	CDS	46052686	46052735	+
GWHAAZE00000009	CDS	46053666	46053792	+
GWHAAZE00000009	CDS	46053907	46054005	+
GWHAAZE00000009	CDS	46054211	46054845	+

Transcript Sequence
>GWHTAAZE030646 ATGACTGCACCTGGCTCATTGGCTTGGCTAAACCTAGTGCTGTACTGGGAGATTCAAAGGTATGGATATAATGTTATATCTGCAGCAGCAAATGAATCCGAAATTAAGGTTTATGAAATCAAGAGAGGGAATTTTTCTGTCAAGATCTCCAATTATGGAAAATTAGACGATGTTGTACTTGGATTTGAATCGATGGATGACTATAAGAACGATACAACCTATTTCGGTGCCATTGTGGGGCGTGTGGCTAACAGAATTGGAGGGGCTCGTTTCACACTAAATGGCATTCAGTACAAAACACCTGTTAATGATAATGGAAAGAACACTCTTCATGGTGGTACCAAAGGATTCAGTGATGTATTATGGACCGTGAGAAGATACAACCCGGGTAGTTCTATTACACTCACCTACCAGAGCTTCGATGGTGAAATGGGATTTCCTGGCGAACTATCAGTTGCGGTCACATACGCATTCATAGGATCAAACAAACTGGCCATAAAAATGCAAGCGAAACCACTGAACAAGGCGACCCCGGTGAACCTAGCCTCTCACACTTACTGGAACCTTGCAGGCCAAAATAGCGGTGACATCTTATCACATGCCATCCAACTATTCGGTTCCAACATCACTCCAGTCGACTCCGAACTCATTCCCACTGGCCAAATTGTGCCCGTTCAAGGAACTCCATATGATTTCCTCCAACCGGCCGTGATCGGAAGCCAGATCAACAACCTACCCGACGGATACGACATCAACTACGTGATTGATAATAAACGCGAGGAGCATCTGAAAAAGGCAGCCATGGTGTACGATAGCAAATCAGGGAGGAGAATGGAGCTGTGGACAAATAAACCCGGGGTACAGTTTTATACAAGCAATATGCTGGATAACGTGAAGGGGAAAGGCGGGTTTGTTTATAAAAAGCATGCTGCATTTTGCTTGGAGACGCAAGGTTTTCCGGATTCTGTGAATCATCCCAATTTTCCTTCACAGATTGTTTATCCAAGGGGGACTTATGAGCATATTATGGTTTATAGATTCACAGCTAGTAAGAGAAGTTACAACTAG

Network for GWHGAAZE030612

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01263.21	Aldose_epim	48	346	4.40E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01785	galM, GALM	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0019318	biological_process	hexose metabolic process
GO:0030246	molecular_function	carbohydrate binding
GO:0003824	molecular_function	catalytic activity
GO:0016853	molecular_function	isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.483
	SRR3591706	second leaf	0.163
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.350
	SRR3591709	Stem	5.034
	SRR3591710	White floral bud	17.463
	SRR3591711	White flower	0.513
	SRR3591712	Green floral bud	51.886
	SRR3591713	Yellow flower	0.114
SRP173429	SRR8316895	Juvenile bud stage	66.519
	SRR8316896	Juvenile bud stage	107.041
	SRR8316897	Juvenile bud stage	18.025
	SRR8316894	Third green stage	27.442
	SRR8316900	Third green stage	75.529
	SRR8316901	Third green stage	84.908
	SRR8316898	Complete white stage	0.268
	SRR8316899	Complete white stage	2.734
	SRR8316903	Complete white stage	0.953
	SRR8316902	Silver flowering stage	0.240
	SRR8316904	Silver flowering stage	0.516
	SRR8316905	Silver flowering stage	0.047
	SRR8316906	Gold flowering stage	0.174
	SRR8316907	Gold flowering stage	0.132
	SRR8316908	Gold flowering stage	0.004
SRP132670	SRR6706286	Control	36.629
	SRR6706287	Light intensity 50%	32.652
	SRR6706288	Light intensity 20%	29.804
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	107.164
	CNS0095593	Slightly white alabastrum(diploid) 2	68.908
	CNS0095594	Slightly white alabastrum(diploid) 3	133.606
	CNS0095595	Whole white alabastrum(diploid) 2	97.942
	CNS0095596	Whole white alabastrum(diploid) 3	127.861
	CNS0095597	Whole white alabastrum(diploid) 4	98.975
	CNS0095598	Silvery flower (diploied) 1	4.160
	CNS0095599	Silvery flower (diploied) 2	4.608
	CNS0095600	Silvery flower (diploied) 3	2.000
	CNS0095601	Golden flower (diploid) 1	4.405
	CNS0095602	Golden flower (diploid) 2	2.622
	CNS0095603	Golden flower (diploid) 3	2.714
	CNS0095604	Slightly white alabastrum(tetraploid) 1	95.628
	CNS0095605	Slightly white alabastrum(tetraploid) 2	97.332
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.560
	CNS0095607	Whole white alabastrum(tetraploid) 1	135.186
	CNS0095608	Whole white alabastrum(tetraploid) 2	126.638
	CNS0095609	Whole white alabastrum(tetraploid) 3	72.822
	CNS0095610	Silvery flower (diploied) 1	0.162
	CNS0095611	Silvery flower (diploied) 2	1.052
	CNS0095612	Silvery flower (diploied) 3	2.269
	CNS0095613	Golden flower (tetraploid) 1	0.281
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	2.334
CRA001975	CRR073297	Stem 1	56.759
	CRR073298	Stem 2	49.413
	CRR073299	Stem 3	52.583
	CRR073300	Leaf 1	51.275
	CRR073301	Leaf 2	49.420
	CRR073302	Leaf 3	39.456
	CRR073303	Juvenile bud 1	33.910
	CRR073304	Juvenile bud 2	37.651
	CRR073305	Juvenile bud 3	1.578
	CRR073306	Third green 1	4.122
	CRR073307	Third green 2	8.044
	CRR073308	Third green 3	5.330
	CRR073309	Second white 1	0.013
	CRR073310	Second white 2	0.518
	CRR073311	Second white 3	1.086
	CRR073312	Silver flowering 1	2.769
	CRR073313	Silver flowering 2	4.042
	CRR073314	Silver flowering 3	3.576
	CRR073315	Gold flowering 1	4.272
	CRR073316	Gold flowering 2	1.268
	CRR073317	Gold flowering 3	2.984
	CRR073318	Tawny withering 1	4.239
	CRR073319	Tawny withering 2	4.738
	CRR073320	Tawny withering 3	3.489