Gene detail

Detail information of GWHGAAZE030676

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037509.1	0	UDP-glucose 6-dehydrogenase family protein isoform 1 [Theobroma cacao]
COG	YP_003548756.1	6E-162	nucleotide sugar dehydrogenase
Swissprot	tr\|Q2QS13\|UGDH5_ORYSJ	0	UDP-glucose 6-dehydrogenase 5
trEMBL	tr\|A0A061FXK8\|A0A061FXK8_THECC	0	UDP-glucose 6-dehydrogenase {ECO:0000256\|PIRNR:PIRNR000124}
TAIR10	AT5G15490.1	0	UDP-glucose 6-dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47014963	47016072	-
GWHAAZE00000009	mRNA	47014963	47016072	-
GWHAAZE00000009	exon	47014963	47016072	-
GWHAAZE00000009	CDS	47014963	47016072	-

Transcript Sequence
>GWHTAAZE030710 ATGATTGCCGATGTATCAAAATCTAACAAGATTGTGGTTGAGAAATCGACGGTCCCGGTCAAAACAGCAGAGGCGATCGAGAAAATATTGACGCACAACAGCAAGGGGATCAAATACCAGATTTTGTCGAACCCCGAGTTTCTTGCAGAGGGGACCGCAATAGAGGACCTTTTTAAGCCGGACCGCGTTCTCATCGGAGGGCGTGAAACCCCAGATGGGCAAAAGGCAATCAAGGCGTTGAAAGACGTGTATGCCAATTGGGTACCTGAGGATAGAATCATATGCACAAATCTTTGGTCTGCAGAGCTCTCAAAGCTAGCTGCAAATGCCTTCTTGGCCCAAAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCGAGGCAACCGGAGCTGACGTGTCGCAGGTCTCCCATGCCGTTGGCAAGGACACTAGAATTGGGCCCAAGTTTCTGAATTCCAGTGTTGGCTTTGGTGGATCCTGTTTTCAGAAAGACATCCTCAACTTGGTCTACATTTGTGAGTGCAACGGCCTCCCTGAGGTGGCTAACTATTGGAAGCAAGTCATTAAGGTGAATGACTACCAAAAGACCCGCTTTGTGAACCGCATCGTGTCCTCAATGTTCAACACGGTATCAGGCAAGAAAATTGCGATTTTCGGGTTTGCTTTCAAGAAAGATACTGGTGACACAAGGGAGACTCCAGCCATTGATGTGTGCAAGGGGCTATTAGGTGACAAAGCCCGGTTGAGCATATATGACCCTCAGGTGACCGAAGATCAAATTCAGAGGGATCTCTCAATGAACAAGTTCGATTGGGACCACCCGGTGCACCTACAACCATTGAGCCCAACCACAGTTAAGCAAGTGGGTGTGGTGTGGGACGCGTACGAGGCTGCTAAGGATGCTCATGCCCTCTGCATTTTGACTGAGTGGGACGAGTTCAAGAATCTTGATTACCAGAGGATTTACAATAATATGCAGAAACCCGCATTTGTGTTTGATGGAAGGAACATTGTGAACCCACAGAAGCTTAGGGAGATTGGGTTCATTGTGTATTCGATCGGGAAGCCGTTGGATCCGTGGCTAAAGGACATGCCTGTTGTGGCATAA

Network for GWHGAAZE030676

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03721.15	UDPG_MGDP_dh_N	1	74	8.30E-22
PF00984.20	UDPG_MGDP_dh	99	193	2.30E-32
PF03720.16	UDPG_MGDP_dh_C	217	341	3.30E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00012	UGDH, ugd	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Ascorbate and aldarate metabolism	map00053
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0000271	biological_process	polysaccharide biosynthetic process
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287	molecular_function	NAD binding
GO:0003979	molecular_function	UDP-glucose 6-dehydrogenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.400
	SRR3591706	second leaf	28.385
	SRR3591707	mature leaf	13.385
	SRR3591708	Shoot apex	47.449
	SRR3591709	Stem	12.909
	SRR3591710	White floral bud	66.257
	SRR3591711	White flower	166.516
	SRR3591712	Green floral bud	26.498
	SRR3591713	Yellow flower	181.973
SRP173429	SRR8316895	Juvenile bud stage	13.794
	SRR8316896	Juvenile bud stage	19.903
	SRR8316897	Juvenile bud stage	6.551
	SRR8316894	Third green stage	4.131
	SRR8316900	Third green stage	9.370
	SRR8316901	Third green stage	10.892
	SRR8316898	Complete white stage	12.641
	SRR8316899	Complete white stage	13.269
	SRR8316903	Complete white stage	14.360
	SRR8316902	Silver flowering stage	28.818
	SRR8316904	Silver flowering stage	43.917
	SRR8316905	Silver flowering stage	25.187
	SRR8316906	Gold flowering stage	93.950
	SRR8316907	Gold flowering stage	77.057
	SRR8316908	Gold flowering stage	97.332
SRP132670	SRR6706286	Control	15.103
	SRR6706287	Light intensity 50%	14.341
	SRR6706288	Light intensity 20%	11.695
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.061
	CNS0095593	Slightly white alabastrum(diploid) 2	15.274
	CNS0095594	Slightly white alabastrum(diploid) 3	13.580
	CNS0095595	Whole white alabastrum(diploid) 2	6.764
	CNS0095596	Whole white alabastrum(diploid) 3	6.226
	CNS0095597	Whole white alabastrum(diploid) 4	7.287
	CNS0095598	Silvery flower (diploied) 1	18.440
	CNS0095599	Silvery flower (diploied) 2	15.953
	CNS0095600	Silvery flower (diploied) 3	40.377
	CNS0095601	Golden flower (diploid) 1	21.927
	CNS0095602	Golden flower (diploid) 2	53.378
	CNS0095603	Golden flower (diploid) 3	47.969
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.230
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.056
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.894
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.930
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.842
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.543
	CNS0095610	Silvery flower (diploied) 1	29.017
	CNS0095611	Silvery flower (diploied) 2	13.146
	CNS0095612	Silvery flower (diploied) 3	29.557
	CNS0095613	Golden flower (tetraploid) 1	39.552
	CNS0095614	Golden flower (tetraploid) 2	57.864
	CNS0095615	Golden flower (tetraploid) 3	36.417
CRA001975	CRR073297	Stem 1	27.176
	CRR073298	Stem 2	24.612
	CRR073299	Stem 3	41.477
	CRR073300	Leaf 1	14.740
	CRR073301	Leaf 2	19.863
	CRR073302	Leaf 3	20.678
	CRR073303	Juvenile bud 1	14.053
	CRR073304	Juvenile bud 2	23.599
	CRR073305	Juvenile bud 3	12.418
	CRR073306	Third green 1	128.542
	CRR073307	Third green 2	147.067
	CRR073308	Third green 3	125.500
	CRR073309	Second white 1	96.551
	CRR073310	Second white 2	61.058
	CRR073311	Second white 3	56.817
	CRR073312	Silver flowering 1	203.919
	CRR073313	Silver flowering 2	228.926
	CRR073314	Silver flowering 3	182.825
	CRR073315	Gold flowering 1	17.588
	CRR073316	Gold flowering 2	14.819
	CRR073317	Gold flowering 3	27.097
	CRR073318	Tawny withering 1	28.184
	CRR073319	Tawny withering 2	41.950
	CRR073320	Tawny withering 3	25.234