Gene detail

Detail information of GWHGAAZE030678

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011072842.1	1.28138E-93	PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic-like isoform X2 [Sesamum indicum]
COG	YP_156666.1	7E-34	acetyl-CoA carboxylase biotin carboxyl carrier protein
Swissprot	tr\|Q42533\|BCCP1_ARATH	1E-68	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A022QUL6\|A0A022QUL6_ERYGU	2E-89	Uncharacterized protein {ECO:0000313\|EMBL:EYU31591.1}
TAIR10	AT5G16390.1	1E-43	chloroplastic acetylcoenzyme A carboxylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47051148	47054179	+
GWHAAZE00000009	mRNA	47051148	47054179	+
GWHAAZE00000009	exon	47051148	47051303	+
GWHAAZE00000009	exon	47052640	47052693	+
GWHAAZE00000009	exon	47052789	47052922	+
GWHAAZE00000009	exon	47053046	47053355	+
GWHAAZE00000009	exon	47053700	47053771	+
GWHAAZE00000009	exon	47053995	47054060	+
GWHAAZE00000009	exon	47054156	47054179	+
GWHAAZE00000009	CDS	47051148	47051303	+
GWHAAZE00000009	CDS	47052640	47052693	+
GWHAAZE00000009	CDS	47052789	47052922	+
GWHAAZE00000009	CDS	47053046	47053355	+
GWHAAZE00000009	CDS	47053700	47053771	+
GWHAAZE00000009	CDS	47053995	47054060	+
GWHAAZE00000009	CDS	47054156	47054179	+

Transcript Sequence
>GWHTAAZE030712 ATGGCTTCTTTCTCCGTTACTTGCCCCAAGCCCTCTGCTCTACTCGGCTCTTTGCAGCACAACCCTAATCAGAAACAACCGCTTCGTCAGGTTTCAGTTCTGTTTAGATCCGACTCCAAATCCAAGAGGGCTTTGGCTGCTGCTGGTGGATTACAGTCATCTAGCTGGAAGCAATTTGACGTTTTGAGGCCATGCGCCCTGCTTAATGAGGTTGCTACCGAGAAACCATCAAACTCTGAATCAATCCCGGAGACTAAATCCGAGGAATCAAGCAAACAGTCTACTCAAATTCCTGATGCTGCATCCATTTCAGCATTTATGAATCAAGTGGCAGATCTTGTTGAACTTGTGGATTCAAGAGACATAATGGAGTTACAGCTGAAACAAGTGGATTGTGAAGTCCTTATACGGAAAAAGGAAGCTTTGCCTCAACCACCGGCTGCAGCTTCTTATGTTATGATGCAATCGCCTTCACCTCAACCTGCATCTGCACCTGCTGCTGCTCCAGCTTCGGCTCCAGTTCCCACTCCTCCAGTTTCAGCAGCGGCACCACCCACTCCCGCACAGCCAAAATCATCCCATCCTCCACTAAAATGCCCCATGGCTGGAACATTCTATCGCTGTCCTGCACCAGGAGCGCCACCTTTCGTGAAGGTAGGAGATAAGGTCCAGAAAGGTCAGGTAATTTGCATCATTGAGGCCATGAAACTGATGAACGACATTGAAGCTGATCAATCTGGAACTGTAGTCGAGATACTTGTAGACGACGCAAAACCAGTTAGTGTCGACACGCCCTTATTTATCATAGAGCCATGA

Network for GWHGAAZE030678

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00364.23	Biotin_lipoyl	197	269	8.90E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02160	accB, bccP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0009317	cellular_component	acetyl-CoA carboxylase complex
GO:0003989	molecular_function	acetyl-CoA carboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.038
	SRR3591706	second leaf	55.500
	SRR3591707	mature leaf	17.638
	SRR3591708	Shoot apex	43.029
	SRR3591709	Stem	25.206
	SRR3591710	White floral bud	28.947
	SRR3591711	White flower	9.675
	SRR3591712	Green floral bud	70.595
	SRR3591713	Yellow flower	5.107
SRP173429	SRR8316895	Juvenile bud stage	35.292
	SRR8316896	Juvenile bud stage	52.776
	SRR8316897	Juvenile bud stage	24.290
	SRR8316894	Third green stage	23.220
	SRR8316900	Third green stage	74.670
	SRR8316901	Third green stage	68.859
	SRR8316898	Complete white stage	15.568
	SRR8316899	Complete white stage	46.035
	SRR8316903	Complete white stage	27.126
	SRR8316902	Silver flowering stage	9.305
	SRR8316904	Silver flowering stage	13.177
	SRR8316905	Silver flowering stage	6.471
	SRR8316906	Gold flowering stage	16.098
	SRR8316907	Gold flowering stage	14.223
	SRR8316908	Gold flowering stage	15.700
SRP132670	SRR6706286	Control	63.371
	SRR6706287	Light intensity 50%	67.566
	SRR6706288	Light intensity 20%	76.899
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.408
	CNS0095593	Slightly white alabastrum(diploid) 2	56.311
	CNS0095594	Slightly white alabastrum(diploid) 3	43.844
	CNS0095595	Whole white alabastrum(diploid) 2	54.215
	CNS0095596	Whole white alabastrum(diploid) 3	53.499
	CNS0095597	Whole white alabastrum(diploid) 4	49.181
	CNS0095598	Silvery flower (diploied) 1	22.053
	CNS0095599	Silvery flower (diploied) 2	22.774
	CNS0095600	Silvery flower (diploied) 3	21.229
	CNS0095601	Golden flower (diploid) 1	18.430
	CNS0095602	Golden flower (diploid) 2	19.638
	CNS0095603	Golden flower (diploid) 3	20.857
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.032
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.342
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.303
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.431
	CNS0095608	Whole white alabastrum(tetraploid) 2	44.237
	CNS0095609	Whole white alabastrum(tetraploid) 3	55.021
	CNS0095610	Silvery flower (diploied) 1	14.809
	CNS0095611	Silvery flower (diploied) 2	20.290
	CNS0095612	Silvery flower (diploied) 3	22.886
	CNS0095613	Golden flower (tetraploid) 1	10.233
	CNS0095614	Golden flower (tetraploid) 2	15.923
	CNS0095615	Golden flower (tetraploid) 3	5.083
CRA001975	CRR073297	Stem 1	81.596
	CRR073298	Stem 2	81.268
	CRR073299	Stem 3	78.280
	CRR073300	Leaf 1	106.148
	CRR073301	Leaf 2	118.854
	CRR073302	Leaf 3	110.178
	CRR073303	Juvenile bud 1	108.997
	CRR073304	Juvenile bud 2	89.259
	CRR073305	Juvenile bud 3	93.981
	CRR073306	Third green 1	28.920
	CRR073307	Third green 2	26.800
	CRR073308	Third green 3	26.553
	CRR073309	Second white 1	13.202
	CRR073310	Second white 2	11.311
	CRR073311	Second white 3	7.109
	CRR073312	Silver flowering 1	16.356
	CRR073313	Silver flowering 2	25.562
	CRR073314	Silver flowering 3	28.031
	CRR073315	Gold flowering 1	33.760
	CRR073316	Gold flowering 2	48.052
	CRR073317	Gold flowering 3	40.470
	CRR073318	Tawny withering 1	60.469
	CRR073319	Tawny withering 2	45.504
	CRR073320	Tawny withering 3	82.546