Gene detail

Detail information of GWHGAAZE030717

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010105170.1	9.0278E-144	3-oxoacyl-[acyl-carrier-protein] reductase [Morus notabilis]
COG	YP_007141366.1	3E-92	3-oxoacyl-(acyl-carrier-protein) reductase
Swissprot	tr\|P28643\|FABG_CUPLA	5E-130	3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic (Precursor)
trEMBL	tr\|W9RYU2\|W9RYU2_9ROSA	3E-144	3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313\|EMBL:EXC04016.1}
TAIR10	AT1G24360.1	3E-96	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47597290	47601174	+
GWHAAZE00000009	mRNA	47597290	47601174	+
GWHAAZE00000009	exon	47597290	47597448	+
GWHAAZE00000009	exon	47597987	47598040	+
GWHAAZE00000009	exon	47598739	47598819	+
GWHAAZE00000009	exon	47598914	47598959	+
GWHAAZE00000009	exon	47599032	47599126	+
GWHAAZE00000009	exon	47599217	47599249	+
GWHAAZE00000009	exon	47599848	47599941	+
GWHAAZE00000009	exon	47600051	47600130	+
GWHAAZE00000009	exon	47600289	47600382	+
GWHAAZE00000009	exon	47600961	47601043	+
GWHAAZE00000009	exon	47601142	47601174	+
GWHAAZE00000009	CDS	47597290	47597448	+
GWHAAZE00000009	CDS	47597987	47598040	+
GWHAAZE00000009	CDS	47598739	47598819	+
GWHAAZE00000009	CDS	47598914	47598959	+
GWHAAZE00000009	CDS	47599032	47599126	+
GWHAAZE00000009	CDS	47599217	47599249	+
GWHAAZE00000009	CDS	47599848	47599941	+
GWHAAZE00000009	CDS	47600051	47600130	+
GWHAAZE00000009	CDS	47600289	47600382	+
GWHAAZE00000009	CDS	47600961	47601043	+
GWHAAZE00000009	CDS	47601142	47601174	+

Transcript Sequence
>GWHTAAZE030751 ATGAGAAATACAGGTGCTAGAGCTCAGGTTACAGCAGGTGAACGAGTAGGCGTTGATGATGTTTCACTCAATGTGGAAGCTCCTGTTGTTGTTGTCACCGGAGCTTCTAGAGGAATTGGCAGAGCCATTGCATTAACTTTGGGGAAATCTGGTTGTAAGGTCCTAGTGAACTATGCGAAATCTTCAAAGGAGGCTGAAGAAGTGGCTACAGAGATTGAGGCATGTGGAGGAAAAGCCCTTACTTTTGGAGGTGACGTTTCGAAAGAAAATGATGTGGACTCGATGATTAAAACGGCAGTTGATCAATGGGGAACAGTGGATATCTTGATAAATAATGCAGGAATCACAAGGGATGGTTTGTTGATGAGAATGAAAAAATCTCAGTGGCAGGAGGTCATTGATTTGAATCTTACAGGAGTATTTCTAAGCACACAGGCTGCAGCCAAAGTCATGATGAAGAAGAGAAAGGAACGTTCAACGACAGGAGAATTCAAGAGCTCCTGTGTAGGAGGATCCGGCCTGGATCGAGAGCACTTAATACGTCGAAGTGGATTTTATGTAGGCCAATTACAGTGCTGCAAAAGCGGAGTTATTGGCTTTACAAAGAGTGTTGCAAAAGAATATGCAAGCAGGAATATTAATGTTAATGCCGTGGCTCCTGGATTTATTGCATCTGATATGACTGTCAAGCTTGGTGAAGATATCGAAAAGAAAATCCTGCAGACAATACCCTTAGGACGATATGGTCAACCTGAAGAAGTTGCTGGACTAGTGGAATTCTTGGCACTAAATCCTGCTGCTGGTTACATTACTGGACAGGTTTTCACCATTGATGGAGGGATGGTTATGTAG

Network for GWHGAAZE030717

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	34	281	6.00E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00059	fabG, OAR1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780
		Prodigiosin biosynthesis	map00333

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	68.924
	SRR3591706	second leaf	51.375
	SRR3591707	mature leaf	32.797
	SRR3591708	Shoot apex	71.204
	SRR3591709	Stem	53.752
	SRR3591710	White floral bud	51.465
	SRR3591711	White flower	72.513
	SRR3591712	Green floral bud	48.842
	SRR3591713	Yellow flower	102.459
SRP173429	SRR8316895	Juvenile bud stage	28.162
	SRR8316896	Juvenile bud stage	42.709
	SRR8316897	Juvenile bud stage	19.203
	SRR8316894	Third green stage	18.638
	SRR8316900	Third green stage	58.096
	SRR8316901	Third green stage	49.384
	SRR8316898	Complete white stage	21.600
	SRR8316899	Complete white stage	58.860
	SRR8316903	Complete white stage	38.224
	SRR8316902	Silver flowering stage	32.556
	SRR8316904	Silver flowering stage	43.710
	SRR8316905	Silver flowering stage	24.188
	SRR8316906	Gold flowering stage	83.829
	SRR8316907	Gold flowering stage	81.616
	SRR8316908	Gold flowering stage	85.965
SRP132670	SRR6706286	Control	29.354
	SRR6706287	Light intensity 50%	33.488
	SRR6706288	Light intensity 20%	37.001
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.076
	CNS0095593	Slightly white alabastrum(diploid) 2	24.365
	CNS0095594	Slightly white alabastrum(diploid) 3	25.529
	CNS0095595	Whole white alabastrum(diploid) 2	25.524
	CNS0095596	Whole white alabastrum(diploid) 3	27.506
	CNS0095597	Whole white alabastrum(diploid) 4	24.010
	CNS0095598	Silvery flower (diploied) 1	37.138
	CNS0095599	Silvery flower (diploied) 2	31.647
	CNS0095600	Silvery flower (diploied) 3	66.787
	CNS0095601	Golden flower (diploid) 1	33.988
	CNS0095602	Golden flower (diploid) 2	55.375
	CNS0095603	Golden flower (diploid) 3	54.472
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.482
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.822
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.692
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.528
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.044
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.693
	CNS0095610	Silvery flower (diploied) 1	65.433
	CNS0095611	Silvery flower (diploied) 2	61.292
	CNS0095612	Silvery flower (diploied) 3	53.015
	CNS0095613	Golden flower (tetraploid) 1	58.930
	CNS0095614	Golden flower (tetraploid) 2	68.278
	CNS0095615	Golden flower (tetraploid) 3	68.452
CRA001975	CRR073297	Stem 1	45.631
	CRR073298	Stem 2	44.597
	CRR073299	Stem 3	42.967
	CRR073300	Leaf 1	47.933
	CRR073301	Leaf 2	43.630
	CRR073302	Leaf 3	39.366
	CRR073303	Juvenile bud 1	48.827
	CRR073304	Juvenile bud 2	40.921
	CRR073305	Juvenile bud 3	42.685
	CRR073306	Third green 1	19.733
	CRR073307	Third green 2	18.694
	CRR073308	Third green 3	21.500
	CRR073309	Second white 1	50.708
	CRR073310	Second white 2	47.399
	CRR073311	Second white 3	48.689
	CRR073312	Silver flowering 1	48.344
	CRR073313	Silver flowering 2	59.132
	CRR073314	Silver flowering 3	58.170
	CRR073315	Gold flowering 1	41.004
	CRR073316	Gold flowering 2	66.108
	CRR073317	Gold flowering 3	39.124
	CRR073318	Tawny withering 1	41.499
	CRR073319	Tawny withering 2	40.846
	CRR073320	Tawny withering 3	42.554