Gene detail

Detail information of GWHGAAZE030773

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010678281.1	PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Beta vulgaris subsp. vulgaris]
COG	YP_007109169.1	glutamate-1-semialdehyde 2,1-aminomutase
Swissprot	tr\|P31593\|GSA_TOBAC	Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic (Precursor)
trEMBL	tr\|A0A0A0K488\|A0A0A0K488_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN43794.1}
TAIR10	AT3G48730.1	glutamate-1-semialdehyde 2,1-aminomutase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48227894	48230655	+
GWHAAZE00000009	mRNA	48227894	48230655	+
GWHAAZE00000009	exon	48227894	48228064	+
GWHAAZE00000009	exon	48228954	48229127	+
GWHAAZE00000009	exon	48229588	48230655	+
GWHAAZE00000009	CDS	48227894	48228064	+
GWHAAZE00000009	CDS	48228954	48229127	+
GWHAAZE00000009	CDS	48229588	48230655	+

Transcript Sequence
>GWHTAAZE030807 ATGGCAGGGATTGGGCTATCATGGCCATCGAAGCTCTCTCACAGACCCAAATTCACCTCATCGCGATCACGATCTTCAGGCCGATGTGTTAAAATGATGACAGTATCTGTAGATGAGAAAAAGAAGGCTTTCACTCTCACCAAGTCCGAACAAGCTTTCAACGCTGCCAAGGAGTTGATGCCTGGAGGTGTAAATTCCCCTGTACGAGCTTTCAATTCGGTTGGAGGACAGCCTATTGTGTTCGATTCTGTCAAGGGCTCTCACATGTGGGACATCGATGGCAATGAGTACATAGACTATGTTGGTTCATGGGGACCCGCAATCATTGGTCATGCAGATGATGAGGTACTTGCAGCCTTGGCTGAAACAATGAAAAAGGGAACCAGCTTCGGTGCGCCATGTCTTCTAGAAAACGAGTTAGCCGAGATGGTCATTTCAGCAGTCCCTAGTATAGAAATGGTCCGATTCGTAAACTCAGGCACAGAAGCATGCATGGGTGTACTCCGCCTAGCTAGAGCCTTCACCGGCCGAGAGAAACTCATCAAATTCGAGGGTTGCTACCACGGCCACGCCGATCCCTTCCTTGTTAAGGCCGGCAGTGGAGTTGCTACTCTTGGACTCCCCGATTCCCCCGGTGTCCCTAAGGCTGCCACCTACGAAACCCTAACATCCCCATACAACGACATCGCCACTGTCGAAAATCTCTTTGAGAAGAACAAAGGAGAGATTGCGGCCGTTATCCTGGAACCCGTTGTAGGGAATTCCGGCTTCATTACGCCCAAACCTGAATTCCTAAATGCCCTCCGTCGAATCACCAAAGAAAACGGTGCTCTCCTTATATTCGATGAGGTGATGACAGGGTTCCGGCTGTCCTATGGTGGAGCTCAGGAGTACTTTGGCGTAACCCCCGATTTAACGACGCTTGGGAAGATTATTGGAGGAGGATTACCAGTGGGTGCGTATGGAGGAAGGAGAGACATTATGGAGATGGTGGCACCGGCGGGACCCATGTACCAGGCTGGGACCTTAAGTGGGAACCCGTTGGCTATGACCGCCGGAATCCACACTCTTAAGCGGTTGAGTGGGCTCGGAAACTACGACTACTTGAACAAAATCACGAGTGAACTTGTTGAGGGTATTATCGGTGCTGGTAGAAAGGCCGGGCATGCAATATGTGGAGGGTATATAAGCGGGATGTTTGGATTTTTCTTTACAGAAGGGCCTGTATATAATTTTGAAGATGCAAAGAAGAGTGATACTGCTAAGTTTGCAAAGTTTTACAGAGGAATGCTTGAAGAAGGTGTTTATTTTGCGCCTTCGCAGTTTGAGGCTGGGTTTACGAGCTTAGCGCATACTTCTGAAGATATTCAAAAGACAATTGCTGCAGCTGAGAAGGTTTTCCGGCAACTTTAA

Network for GWHGAAZE030773

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00202.22	Aminotran_3	79	379	1.30E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01845	hemL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0033014	biological_process	tetrapyrrole biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0008483	molecular_function	transaminase activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0042286	molecular_function	glutamate-1-semialdehyde 2,1-aminomutase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	141.347
	SRR3591706	second leaf	307.836
	SRR3591707	mature leaf	162.047
	SRR3591708	Shoot apex	307.823
	SRR3591709	Stem	70.315
	SRR3591710	White floral bud	102.235
	SRR3591711	White flower	128.590
	SRR3591712	Green floral bud	100.037
	SRR3591713	Yellow flower	172.189
SRP173429	SRR8316895	Juvenile bud stage	93.319
	SRR8316896	Juvenile bud stage	87.164
	SRR8316897	Juvenile bud stage	62.964
	SRR8316894	Third green stage	39.133
	SRR8316900	Third green stage	170.596
	SRR8316901	Third green stage	131.784
	SRR8316898	Complete white stage	61.728
	SRR8316899	Complete white stage	123.460
	SRR8316903	Complete white stage	76.559
	SRR8316902	Silver flowering stage	40.389
	SRR8316904	Silver flowering stage	49.007
	SRR8316905	Silver flowering stage	28.334
	SRR8316906	Gold flowering stage	93.904
	SRR8316907	Gold flowering stage	103.897
	SRR8316908	Gold flowering stage	99.820
SRP132670	SRR6706286	Control	156.708
	SRR6706287	Light intensity 50%	144.580
	SRR6706288	Light intensity 20%	148.123
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.092
	CNS0095593	Slightly white alabastrum(diploid) 2	61.147
	CNS0095594	Slightly white alabastrum(diploid) 3	57.219
	CNS0095595	Whole white alabastrum(diploid) 2	61.834
	CNS0095596	Whole white alabastrum(diploid) 3	74.509
	CNS0095597	Whole white alabastrum(diploid) 4	47.713
	CNS0095598	Silvery flower (diploied) 1	101.751
	CNS0095599	Silvery flower (diploied) 2	99.040
	CNS0095600	Silvery flower (diploied) 3	176.487
	CNS0095601	Golden flower (diploid) 1	98.672
	CNS0095602	Golden flower (diploid) 2	175.839
	CNS0095603	Golden flower (diploid) 3	171.167
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.513
	CNS0095605	Slightly white alabastrum(tetraploid) 2	72.511
	CNS0095606	Slightly white alabastrum(tetraploid) 3	135.175
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.276
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.032
	CNS0095609	Whole white alabastrum(tetraploid) 3	146.830
	CNS0095610	Silvery flower (diploied) 1	139.987
	CNS0095611	Silvery flower (diploied) 2	164.375
	CNS0095612	Silvery flower (diploied) 3	145.063
	CNS0095613	Golden flower (tetraploid) 1	87.379
	CNS0095614	Golden flower (tetraploid) 2	143.762
	CNS0095615	Golden flower (tetraploid) 3	143.485
CRA001975	CRR073297	Stem 1	215.394
	CRR073298	Stem 2	186.797
	CRR073299	Stem 3	261.208
	CRR073300	Leaf 1	135.324
	CRR073301	Leaf 2	146.903
	CRR073302	Leaf 3	177.709
	CRR073303	Juvenile bud 1	147.585
	CRR073304	Juvenile bud 2	141.213
	CRR073305	Juvenile bud 3	172.444
	CRR073306	Third green 1	94.387
	CRR073307	Third green 2	54.886
	CRR073308	Third green 3	67.063
	CRR073309	Second white 1	141.796
	CRR073310	Second white 2	104.625
	CRR073311	Second white 3	106.711
	CRR073312	Silver flowering 1	167.782
	CRR073313	Silver flowering 2	202.699
	CRR073314	Silver flowering 3	167.628
	CRR073315	Gold flowering 1	287.553
	CRR073316	Gold flowering 2	366.702
	CRR073317	Gold flowering 3	374.602
	CRR073318	Tawny withering 1	101.062
	CRR073319	Tawny withering 2	57.938
	CRR073320	Tawny withering 3	89.035