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Detail information of GWHGAAZE030801
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_009773258.1
0
PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Nicotiana sylvestris]
COG
YP_007111334.1
5E-98
Mg-protoporphyrin IX methyltransferase
Swissprot
tr|Q9SW18|CHLM_ARATH
1E-154
Magnesium protoporphyrin IX methyltransferase, chloroplastic (Precursor)
trEMBL
tr|Q9MUE2|Q9MUE2_TOBAC
0
S-adenosyl-L-methionine Mg-protoporphyrin IX methyltranserase {ECO:0000313|EMBL:AAF70243.1}
TAIR10
AT4G25080.5
3E-114
magnesium-protoporphyrin IX methyltransferase
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000009
gene
48647496
48649184
+
GWHAAZE00000009
mRNA
48647496
48649184
+
GWHAAZE00000009
exon
48647496
48648059
+
GWHAAZE00000009
exon
48648777
48649184
+
GWHAAZE00000009
CDS
48647496
48648059
+
GWHAAZE00000009
CDS
48648777
48649184
+
Transcript Sequence
>GWHTAAZE030835 ATGGCGTACTCGTCGGCGATATTATCTCCGGCCTGTATCCATACTAGCCCTAAATTATCTCCAAAACAATACAAACCAAACCGCCAAACACTCATCGTATCCGCCATTCCACCACTCTCCACTGCATCCGACCTCTCCGCCATCACCTCTCCACTCGACAGCACCACACTGGCTGTCATCGGCGGAGGATCGGTCGCCGCCCTAGCAGCCGTGCTGTCGATAGCAGACCCCGAGATGAGGAGGCGGAGCCAGGCCGCTGAAGTTGGGGGAGGGGACAAGGAGGTGGTGAGGGAGTATTTTAATAATAATGGATTCGAGAGGTGGAAGAAGATTTACGGAGATACTGATGAGGTGAATAGGGTGCAGTTGGATATAAGGATTGGACATGCGAAGACTGTGGAGAGTGTGATGAAAATGTTGAAGGATGAAGGGAGTCTGGAAGGTGTTACTGTATGTGATGCAGGCTGTGGGACCGGACTTTTATCCATTCCATTAGCCAAGGAAGGTGCTATTGTTTCCGCTAGTGATATCTCTGCTGCTATGGTTGCTGAAGCTGAGAAGCAGGCAAGAGAAGAGCTCCTGACTGGAAAGGATGAGCTCTCAGCAGCACCAGCGTTACCAAAGTTTGAAGTGAAGGACTTAGAGAGCTTAGATGGTAAATACCACACAGTGGTCTGCTTAGACGTTTTGATACATTATCCTCAAAGTAAAGCAGACGCAATGATTGCCCATCTAGCTTCATTGGCCGAGGATCGCTTAATTTTGAGTTTTGCTCCAAAGACACTCTATTATGATCTGTTGAAGAGGGTTGGGGAGTTGTTCCCCGGTCCTTCAAAGGCAACAAGGGCGTATCTTCACGCAGAGGCGGATGTTGAGAAGGCATTGCAAAAGGTTGGGTGGAGAATAAGAAAGAGAGGCCTAACCACCACGCAGTTTTATTTTGCAAAGCTCATTGAAGCTGTGCCTGCTTAG
Network for GWHGAAZE030801
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF07109.12
Mg-por_mtran_C
226
321
2.80E-35
Protein Sequence
>GWHPAAZE030819 MAYSSAILSPACIHTSPKLSPKQYKPNRQTLIVSAIPPLSTASDLSAITSPLDSTTLAVIGGGSVAALAAVLSIADPEMRRRSQAAEVGGGDKEVVREYFNNNGFERWKKIYGDTDEVNRVQLDIRIGHAKTVESVMKMLKDEGSLEGVTVCDAGCGTGLLSIPLAKEGAIVSASDISAAMVAEAEKQAREELLTGKDELSAAPALPKFEVKDLESLDGKYHTVVCLDVLIHYPQSKADAMIAHLASLAEDRLILSFAPKTLYYDLLKRVGELFPGPSKATRAYLHAEADVEKALQKVGWRIRKRGLTTTQFYFAKLIEAVPA
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K03428
bchM, chlM
Metabolic pathways
map01100
Biosynthesis of secondary metabolites
map01110
Porphyrin and chlorophyll metabolism
map00860
Gene Ontology
GO term
Ontology
Name
GO:0015995
biological_process
chlorophyll biosynthetic process
GO:0046406
molecular_function
magnesium protoporphyrin IX methyltransferase activity
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
109.514
SRR3591706
second leaf
309.044
SRR3591707
mature leaf
164.156
SRR3591708
Shoot apex
219.320
SRR3591709
Stem
43.718
SRR3591710
White floral bud
21.375
SRR3591711
White flower
35.379
SRR3591712
Green floral bud
29.378
SRR3591713
Yellow flower
36.310
SRP173429
SRR8316895
Juvenile bud stage
46.946
SRR8316896
Juvenile bud stage
46.610
SRR8316897
Juvenile bud stage
34.952
SRR8316894
Third green stage
21.531
SRR8316900
Third green stage
61.317
SRR8316901
Third green stage
44.600
SRR8316898
Complete white stage
21.334
SRR8316899
Complete white stage
43.672
SRR8316903
Complete white stage
22.984
SRR8316902
Silver flowering stage
15.484
SRR8316904
Silver flowering stage
20.084
SRR8316905
Silver flowering stage
11.388
SRR8316906
Gold flowering stage
33.505
SRR8316907
Gold flowering stage
33.446
SRR8316908
Gold flowering stage
38.626
SRP132670
SRR6706286
Control
100.545
SRR6706287
Light intensity 50%
83.951
SRR6706288
Light intensity 20%
91.830
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
20.424
CNS0095593
Slightly white alabastrum(diploid) 2
15.905
CNS0095594
Slightly white alabastrum(diploid) 3
19.437
CNS0095595
Whole white alabastrum(diploid) 2
18.628
CNS0095596
Whole white alabastrum(diploid) 3
24.784
CNS0095597
Whole white alabastrum(diploid) 4
14.290
CNS0095598
Silvery flower (diploied) 1
59.861
CNS0095599
Silvery flower (diploied) 2
36.501
CNS0095600
Silvery flower (diploied) 3
50.401
CNS0095601
Golden flower (diploid) 1
48.302
CNS0095602
Golden flower (diploid) 2
55.207
CNS0095603
Golden flower (diploid) 3
57.116
CNS0095604
Slightly white alabastrum(tetraploid) 1
37.390
CNS0095605
Slightly white alabastrum(tetraploid) 2
32.730
CNS0095606
Slightly white alabastrum(tetraploid) 3
61.831
CNS0095607
Whole white alabastrum(tetraploid) 1
17.257
CNS0095608
Whole white alabastrum(tetraploid) 2
15.760
CNS0095609
Whole white alabastrum(tetraploid) 3
52.034
CNS0095610
Silvery flower (diploied) 1
72.335
CNS0095611
Silvery flower (diploied) 2
87.972
CNS0095612
Silvery flower (diploied) 3
40.098
CNS0095613
Golden flower (tetraploid) 1
41.684
CNS0095614
Golden flower (tetraploid) 2
65.465
CNS0095615
Golden flower (tetraploid) 3
47.309
CRA001975
CRR073297
Stem 1
98.580
CRR073298
Stem 2
94.431
CRR073299
Stem 3
111.492
CRR073300
Leaf 1
40.746
CRR073301
Leaf 2
43.481
CRR073302
Leaf 3
49.037
CRR073303
Juvenile bud 1
34.304
CRR073304
Juvenile bud 2
31.560
CRR073305
Juvenile bud 3
37.101
CRR073306
Third green 1
11.783
CRR073307
Third green 2
9.447
CRR073308
Third green 3
10.387
CRR073309
Second white 1
19.431
CRR073310
Second white 2
8.668
CRR073311
Second white 3
10.126
CRR073312
Silver flowering 1
9.140
CRR073313
Silver flowering 2
15.066
CRR073314
Silver flowering 3
10.228
CRR073315
Gold flowering 1
194.676
CRR073316
Gold flowering 2
234.036
CRR073317
Gold flowering 3
229.795
CRR073318
Tawny withering 1
42.208
CRR073319
Tawny withering 2
25.831
CRR073320
Tawny withering 3
34.688