Gene detail

Detail information of GWHGAAZE030927

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011039994.1	0	PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
COG	YP_005067651.1	1E-33	hypothetical protein
Swissprot	tr\|Q944I4\|GLYK_ARATH	0	D-glycerate 3-kinase, chloroplastic (Precursor)
trEMBL	tr\|A0A068TRU9\|A0A068TRU9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98083.1}
TAIR10	AT1G80380.2	9E-162	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	50520089	50522587	+
GWHAAZE00000009	mRNA	50520089	50522587	+
GWHAAZE00000009	exon	50520089	50520469	+
GWHAAZE00000009	exon	50520631	50520710	+
GWHAAZE00000009	exon	50520832	50520883	+
GWHAAZE00000009	exon	50520969	50521010	+
GWHAAZE00000009	exon	50521104	50521182	+
GWHAAZE00000009	exon	50521284	50521315	+
GWHAAZE00000009	exon	50521400	50521468	+
GWHAAZE00000009	exon	50521655	50521729	+
GWHAAZE00000009	exon	50521818	50521934	+
GWHAAZE00000009	exon	50522008	50522058	+
GWHAAZE00000009	exon	50522152	50522587	+
GWHAAZE00000009	CDS	50520089	50520469	+
GWHAAZE00000009	CDS	50520631	50520710	+
GWHAAZE00000009	CDS	50520832	50520883	+
GWHAAZE00000009	CDS	50520969	50521010	+
GWHAAZE00000009	CDS	50521104	50521182	+
GWHAAZE00000009	CDS	50521284	50521315	+
GWHAAZE00000009	CDS	50521400	50521468	+
GWHAAZE00000009	CDS	50521655	50521729	+
GWHAAZE00000009	CDS	50521818	50521934	+
GWHAAZE00000009	CDS	50522008	50522058	+
GWHAAZE00000009	CDS	50522152	50522289	+
GWHAAZE00000009	three_prime_UTR	50522290	50522587	+

Transcript Sequence
>GWHTAAZE030961 TTTGGATATTATCATACAGGATTTGGATGTTCTTTGGATGACTTCAGCAACAATGTAAAGAGGTTAGGTCTGGTACACTCGGCCTTTCCAACAGTGCCTGCTGAAGTTTCCTCCGTGAAGGACCTCTTTGAATTTATATGTTCGGGACCCCTTATAACCAAAACGGGCCTTACCCCAGAAATGGTTGCTGAGTCTATTGACAAGTGGTTAGAGTACGGGTTACGCCTATGCAAATTATATCAGCTCAATGAACTGTATTTGACTACACCTCAGAAAGCTAGAATCTATCACTATTATATACCAGTCTTCCTCTGGTGTGAACAGAAAATTTCTCATCATACATCCATGTTTAAAGATGCACAAGATATCCCTCCTTTAGTGATAGGTTTTAGTGCACCACAAGGTTGCGGGAAAACGACGCTTGTCTTCGCACTAGAATATCTTTTCCGAGTCACTGGGAGGAAAGCCGCAACCTTATCAATAGACGACTTCTATTTAACAGCAGAAGAACAGGCTAAACTGAGAGAAAACCATCCGGGGAATGCTCTTCTGGAGTTACGCGGAAATGCTGGAAGCCATGATCTTTCATTCTCTGTTGAAACACTGACAGCTCTAAGCAAATTGACTAAAGAAGGTATGAAGATGAAGCTACCCCGATATGATAAATCTGCATACAGTGGTAGGGGCGACAGAGCTGATCCGACAACGTGGCCAGAGGTTGAAGGTCCTTTAACGGTTGTGCTTTTTGAGGGTTGGATGCTTGGTTTTAAGCCCCTTCCAGTTGAAGTTGTTAAAGCTGTCGATCCACAGCTGGTGGAAGTGAATAAAAGTTTAGAAGCTTATTATGATGCATGGGACAAGTTTGTGGAAGCATGGATAGTCATCAAGATTAAGGACCCAAATTGCGTCTACCAGTGGCGACTGCAGGCTGAGATTGCCATGAGGGCGGATGGAATGCCCGGAATGTCAGATGAAGAGGTTATGGATTTTGTGTCTCGATACTTGCCAGCATACAAAGCTTATCTCCCTGCACTCTACTCAGAAGGACCAAGTGGCTCGGATCCCGAGCATACACTTGTCATTGAAATTGATGAAGGAAGGAACCCCATCCCTTAGGTAACACTAATTCGGATGGAATTTTACTTTGAAGCTCATATTTCGTTCGTTAATTTGATGTCATTTTCTCTGGCATGCTTAGCACAAGGGCATCATTAATGGGAAGGTAATCATATTCACTATTAATTCAATTTCAATGTAAATGAAATGATAAGTTGTGGAGTATGTTTAGTGAAAGGAAAATATTTGTCCAACTGTTTCTGTATTCAAATGGAAGTGGTAGTATATATTTATGAGAGAGATAGATGTAATTCCCGACCCATTGAGAACTGCTAGAGTTGTCCCTGAGAACACTTTA

Network for GWHGAAZE030927

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15918	GLYK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Glycerolipid metabolism	map00561
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.710
	SRR3591706	second leaf	140.335
	SRR3591707	mature leaf	123.449
	SRR3591708	Shoot apex	64.800
	SRR3591709	Stem	26.606
	SRR3591710	White floral bud	14.724
	SRR3591711	White flower	8.818
	SRR3591712	Green floral bud	19.877
	SRR3591713	Yellow flower	4.185
SRP173429	SRR8316895	Juvenile bud stage	29.185
	SRR8316896	Juvenile bud stage	36.034
	SRR8316897	Juvenile bud stage	23.835
	SRR8316894	Third green stage	14.235
	SRR8316900	Third green stage	38.067
	SRR8316901	Third green stage	35.586
	SRR8316898	Complete white stage	8.148
	SRR8316899	Complete white stage	28.101
	SRR8316903	Complete white stage	9.438
	SRR8316902	Silver flowering stage	4.841
	SRR8316904	Silver flowering stage	6.374
	SRR8316905	Silver flowering stage	2.525
	SRR8316906	Gold flowering stage	8.039
	SRR8316907	Gold flowering stage	6.312
	SRR8316908	Gold flowering stage	7.635
SRP132670	SRR6706286	Control	27.684
	SRR6706287	Light intensity 50%	27.680
	SRR6706288	Light intensity 20%	30.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.159
	CNS0095593	Slightly white alabastrum(diploid) 2	33.801
	CNS0095594	Slightly white alabastrum(diploid) 3	32.612
	CNS0095595	Whole white alabastrum(diploid) 2	41.602
	CNS0095596	Whole white alabastrum(diploid) 3	43.855
	CNS0095597	Whole white alabastrum(diploid) 4	41.540
	CNS0095598	Silvery flower (diploied) 1	36.391
	CNS0095599	Silvery flower (diploied) 2	32.940
	CNS0095600	Silvery flower (diploied) 3	15.283
	CNS0095601	Golden flower (diploid) 1	39.189
	CNS0095602	Golden flower (diploid) 2	21.650
	CNS0095603	Golden flower (diploid) 3	19.011
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.174
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.735
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.645
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.843
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.740
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.940
	CNS0095610	Silvery flower (diploied) 1	8.478
	CNS0095611	Silvery flower (diploied) 2	13.927
	CNS0095612	Silvery flower (diploied) 3	8.058
	CNS0095613	Golden flower (tetraploid) 1	3.806
	CNS0095614	Golden flower (tetraploid) 2	9.287
	CNS0095615	Golden flower (tetraploid) 3	3.395
CRA001975	CRR073297	Stem 1	52.570
	CRR073298	Stem 2	38.482
	CRR073299	Stem 3	38.044
	CRR073300	Leaf 1	35.393
	CRR073301	Leaf 2	35.336
	CRR073302	Leaf 3	29.932
	CRR073303	Juvenile bud 1	30.758
	CRR073304	Juvenile bud 2	16.882
	CRR073305	Juvenile bud 3	20.780
	CRR073306	Third green 1	3.959
	CRR073307	Third green 2	3.413
	CRR073308	Third green 3	5.118
	CRR073309	Second white 1	2.654
	CRR073310	Second white 2	3.560
	CRR073311	Second white 3	2.478
	CRR073312	Silver flowering 1	2.652
	CRR073313	Silver flowering 2	2.282
	CRR073314	Silver flowering 3	1.318
	CRR073315	Gold flowering 1	120.649
	CRR073316	Gold flowering 2	164.077
	CRR073317	Gold flowering 3	79.469
	CRR073318	Tawny withering 1	32.465
	CRR073319	Tawny withering 2	23.641
	CRR073320	Tawny withering 3	21.043