Gene detail

Detail information of GWHGAAZE030974

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006593489.1	1.05284E-91	PREDICTED: MYB transcription factor MYB62 isoform X1 [Glycine max]
Swissprot	tr\|Q2V9B0\|MY1R1_SOLTU	6E-19	Transcription factor MYB1R1
trEMBL	tr\|Q0PJL3\|Q0PJL3_SOYBN	6E-89	MYB transcription factor MYB62 {ECO:0000313\|EMBL:ABH02830.1}
TAIR10	AT3G16350.1	4E-35	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51252152	51255023	+
GWHAAZE00000009	mRNA	51252152	51255023	+
GWHAAZE00000009	exon	51252152	51252455	+
GWHAAZE00000009	exon	51253044	51253181	+
GWHAAZE00000009	exon	51254115	51254230	+
GWHAAZE00000009	exon	51254517	51255023	+
GWHAAZE00000009	CDS	51252152	51252455	+
GWHAAZE00000009	CDS	51253044	51253181	+
GWHAAZE00000009	CDS	51254115	51254230	+
GWHAAZE00000009	CDS	51254517	51255023	+

Transcript Sequence
>GWHTAAZE031008 ATGACTCGGCGTTGCTCTCATTGTAGCAACAATGGGCACAACTCTCGAACGTGCTTGTCGCGAGGGGGAGGGGGTTGTGTTAAGCTGTTTGGGGTTAGGCTGACGGACGGTTCTATCATTAAGAAGAGTGCGAGTATGGGGAATCTCTCTGCCCCTCACTACCATTCCCCTGCAGCTTCACCCAATTCTTGTATCTCTCCTTCTCTCTCTCCTTCCCCCTCTTCTCTTAACTTGCTCGACGGTTACCTTTCCGATGACCCTTCCCGCTCCCCCAATCGCCGCTCCTCCTCCGTTCGTAAGAAAGCAGTTGGAGCTGCAGTAACATTTGACATCATTGTGATAGCGCTGGAATGGTGGAGGTTAATGATGTGTGAAGAATTCACTCTTCAAAGAATGCAAGGCAATTTCGAATCTGGCCAGTATATATATAACTCTAAAATATGCATTCCTTGGACAGAAGAGGAGCACCGGATGTTCCTTCTTGGTCTCCAAAAGTTGGGGAAGGGAGACTGGCGTGGCATATCACGCAACTTCGTGGTTTCAAGGACTCCTACCCAGGCCACAGATCAATCACCGGTGAAGGAAGAAAAATTCATGCTCTCTCCTTCCGAAGCAGTAAAAACCGATAAAGTGAACTCTCGTCAGCCTTGTTTAGATCTCACTCTCAAGACAGATTTTGTATCCATGGTAAGCACGCCTTGTAAAGCGGTTGAAGAAACCAAAGAAATTGTGGCACTCTCGTCTGGAAGTAATCCACCAATGATTCATTCGTTCTTCCCAGCATATCTACCTCTCTCATTACCACTATGGCCATCAAATGCACCCTCCTCAATTGGAGAAGAGAGAGGAGCAGATACATCTTGTCACCGTGTCTTAAAACCAATTCCAGTATTTCCCAATGAAGGTGTGAATGTGGATGAACTAGTGGGCATGTCCAAGCTGAATCTAGGAGGGAGTGAAAGTGGTCACATGGAGGCGTCACCACTTGCCCTAAGATTTCTAGGAGAACCATCAAGGCAGTCGGCATTTCATGCAAGTACTCCACAGTCAATGGTTCAGATATAA

Network for GWHGAAZE030974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	150	186	3.50E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.810
	SRR3591706	second leaf	4.861
	SRR3591707	mature leaf	5.567
	SRR3591708	Shoot apex	8.270
	SRR3591709	Stem	5.178
	SRR3591710	White floral bud	28.492
	SRR3591711	White flower	8.402
	SRR3591712	Green floral bud	24.270
	SRR3591713	Yellow flower	3.937
SRP173429	SRR8316895	Juvenile bud stage	3.232
	SRR8316896	Juvenile bud stage	5.075
	SRR8316897	Juvenile bud stage	1.412
	SRR8316894	Third green stage	2.602
	SRR8316900	Third green stage	15.196
	SRR8316901	Third green stage	12.516
	SRR8316898	Complete white stage	1.590
	SRR8316899	Complete white stage	4.998
	SRR8316903	Complete white stage	3.568
	SRR8316902	Silver flowering stage	3.935
	SRR8316904	Silver flowering stage	3.333
	SRR8316905	Silver flowering stage	2.350
	SRR8316906	Gold flowering stage	4.640
	SRR8316907	Gold flowering stage	4.180
	SRR8316908	Gold flowering stage	3.985
SRP132670	SRR6706286	Control	7.374
	SRR6706287	Light intensity 50%	7.857
	SRR6706288	Light intensity 20%	6.390
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.060
	CNS0095593	Slightly white alabastrum(diploid) 2	5.033
	CNS0095594	Slightly white alabastrum(diploid) 3	5.277
	CNS0095595	Whole white alabastrum(diploid) 2	13.419
	CNS0095596	Whole white alabastrum(diploid) 3	12.708
	CNS0095597	Whole white alabastrum(diploid) 4	21.495
	CNS0095598	Silvery flower (diploied) 1	7.211
	CNS0095599	Silvery flower (diploied) 2	8.449
	CNS0095600	Silvery flower (diploied) 3	8.906
	CNS0095601	Golden flower (diploid) 1	8.717
	CNS0095602	Golden flower (diploid) 2	10.123
	CNS0095603	Golden flower (diploid) 3	9.169
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.122
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.466
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.190
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.803
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.959
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.490
	CNS0095610	Silvery flower (diploied) 1	4.781
	CNS0095611	Silvery flower (diploied) 2	9.413
	CNS0095612	Silvery flower (diploied) 3	8.424
	CNS0095613	Golden flower (tetraploid) 1	3.445
	CNS0095614	Golden flower (tetraploid) 2	3.814
	CNS0095615	Golden flower (tetraploid) 3	8.412
CRA001975	CRR073297	Stem 1	4.176
	CRR073298	Stem 2	3.149
	CRR073299	Stem 3	4.817
	CRR073300	Leaf 1	10.409
	CRR073301	Leaf 2	7.361
	CRR073302	Leaf 3	5.605
	CRR073303	Juvenile bud 1	14.346
	CRR073304	Juvenile bud 2	14.730
	CRR073305	Juvenile bud 3	4.490
	CRR073306	Third green 1	7.192
	CRR073307	Third green 2	10.040
	CRR073308	Third green 3	8.148
	CRR073309	Second white 1	4.597
	CRR073310	Second white 2	6.755
	CRR073311	Second white 3	5.184
	CRR073312	Silver flowering 1	13.192
	CRR073313	Silver flowering 2	13.413
	CRR073314	Silver flowering 3	6.623
	CRR073315	Gold flowering 1	9.484
	CRR073316	Gold flowering 2	5.980
	CRR073317	Gold flowering 3	9.860
	CRR073318	Tawny withering 1	7.436
	CRR073319	Tawny withering 2	9.981
	CRR073320	Tawny withering 3	7.870