Gene detail

Detail information of GWHGAAZE031000

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008244740.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51880 isoform X1 [Prunus mume]
COG	YP_004864274.1	0.00000001	protein kinase domain-containing protein
Swissprot	tr\|O65924\|Y2921_ARATH	0	Putative leucine-rich repeat receptor-like protein kinase At2g19210 (Precursor)
trEMBL	tr\|M5WTS4\|M5WTS4_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ17237.1}
TAIR10	AT4G29990.1	0	Leucine-rich repeat transmembrane protein kinase protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51589972	51594186	+
GWHAAZE00000009	mRNA	51589972	51594186	+
GWHAAZE00000009	exon	51589972	51590059	+
GWHAAZE00000009	exon	51590309	51590798	+
GWHAAZE00000009	exon	51590907	51591382	+
GWHAAZE00000009	exon	51591482	51591620	+
GWHAAZE00000009	exon	51591713	51591784	+
GWHAAZE00000009	exon	51591909	51591980	+
GWHAAZE00000009	exon	51592069	51592149	+
GWHAAZE00000009	exon	51592315	51592481	+
GWHAAZE00000009	exon	51592580	51592806	+
GWHAAZE00000009	exon	51592965	51593091	+
GWHAAZE00000009	exon	51593328	51593390	+
GWHAAZE00000009	exon	51593628	51593682	+
GWHAAZE00000009	exon	51593787	51594186	+
GWHAAZE00000009	CDS	51589972	51590059	+
GWHAAZE00000009	CDS	51590309	51590798	+
GWHAAZE00000009	CDS	51590907	51591382	+
GWHAAZE00000009	CDS	51591482	51591620	+
GWHAAZE00000009	CDS	51591713	51591784	+
GWHAAZE00000009	CDS	51591909	51591980	+
GWHAAZE00000009	CDS	51592069	51592149	+
GWHAAZE00000009	CDS	51592315	51592481	+
GWHAAZE00000009	CDS	51592580	51592806	+
GWHAAZE00000009	CDS	51592965	51593091	+
GWHAAZE00000009	CDS	51593328	51593390	+
GWHAAZE00000009	CDS	51593628	51593682	+
GWHAAZE00000009	CDS	51593787	51594186	+

Transcript Sequence
>GWHTAAZE031034 ATGTTCGGAGATTTCTCCTTCAGATTATTCTTTCTTGGTTTTCTCATTGTTACTGCAGCAGTCGTTCATGCCCAGGACGATCAATCAGGGATACATTACAGCTCAGAAAAAGGCTTCATCGACACTGGCTTGAGTAGGACCGTATCACCAGAGTTTAAAGTTGATGAAATTCTTGTACAGCAGTTTTTGACTCTCAGAAGCTTTCCTCAAGGAACCAGAAACTGCTACAACTTGAGACCTGCTCAAGGCAAAGGTAATAGATATCTGATAAGGGCGAGGTTTTTGTATGGAAATTATGATAGAAAAAACCAACTGCCGCAGTTTGATATGCACCTCGGAGTTGAGTACTGGGATACAGTTACATTTGATGAAGCATCGAGTCTTATGAGGTATGAGATCATACACATACCTACCTTGGATCATATAAACATCTGTTTCATAAATACGGGTTTTGGTATACCTTTCGTATCATCACTAGAGCTAAGGTCTTTGAGTGACACCATTTACGTAACTAAATCTGGATCACTTGATTTCTTTCTTCGGTGGGATCTCGGTTCAACAACTGACGAATACGTGAGGTACAAAGATGATAGTTATGATCGCATATGGAGGCCCCGCGACTCACCTAATACTACAACATTAAGCACTCTGTCGGAAATTGACAACAACAACTACCAGGTACCATCAAACGTTTTGAACACTGCCATCACGCCTCAAAACTCCACTGAAAGCTTGCAGTTCTCCTGGAGGCCCGATAATTCCACTGATCAGTTTTATATCTACATGCACTTTGCCGAAGTTGAAGCACTACGACCCAACCAATCCAGATTTTTTAACATCTATCTAAATGGGGACCTGTGGTATGGACCTTTTTCTCCGAGAAATCTGTCAGCATTTACCATATACAGCCAATCACCTGAGAGTTGCATTGGTAATTTTGTGTGTCAAATGACAATAAATAGAACAGAAAATTCAACTCTTCCACCCATCATCAACGCCCTCGAGGTTTATCAAGTAATACAATTCATAGAACCGGAAACGGATGAAAATGATCTTGATGCTATTACAAACATCAAGGCGATGTATGGTGTGACAAGAAACTGGCAAGGGGATCCATGTGCACCTAAAGCTTATATATGGGATGGTCTTAATTGCACCTACGATGGATTCAGTGCCCCTAGGATCATATCTTTGAACTTGTCCTCGAGTGGATTGACCGGTGTGATAGCTCTTCACATATACGATCTCAAAATCTTACGATCTTTGGATTTATCAAACAATAGTTTAACTGGACAAGTGCCTGATTTTCTAACTCAACTGGCTTCCTTGAGAGTCCTGAAGTTGAATGGAAACAACTTCACGGGGTCTGTTCCGGCAGAACTCCTAGAGAAATCAAAGAATGGATTGCTCTCATTGAGTATTGATGGTCTGGACAACACTACAAATCCTTGTCAGTCCGTTCCATGCAAAAAGAAAAAGAAAAATTTTGTTGTTCCAATAGTGGCATCAGTAGCAGCTGGGTCTTTGGTGCTCCTGACAGCAATATTGATTTTCCTGTGGATGGTTAAGAAAAGAAAGCAACGAGTTACCAGGAGGGTGGAAGCTGAGTCGAATGAAAATAATAGCACCTTGGAGACAAAGAATAGAAAATTTACTTACTCAGAAGTCTTGAATATGACCACTAACTTTCAGAGAGTTATTGGGAAAGGAGGATTTGGAACAGTATACCACGGATATGATGGTGTGACTCAAGTTGCTGTGAAGATGCTCTCTCCTTCATCCATTCAAGGGTACAAAGAATTTCAGGCCGAGGCAAGCCTTCTTATGAGCATTCACCATAAAAACTTAACTGCTCTTGTTGGGTACTGCAACGAGGGCACCAACATGGGAATCATCTACGAGTATATGGCTAATGGAAATTTGGATAAGCATCTCTCAGATAGAAATTTATATGTTATGGGTTGGGAAGAGAGACTTCGAATAGCAATAGATGCAGCACAAGGTGACACTCATGTGTCCACAATAGTTGCTGGCACGCCTGGTTACCTTGACCCAGAGTATTACACATCGAACAGATTGACAGAGAAAAGTGATGTGTATGGTTTTGGGATAGTTCTTCTGGAGATAGTTGCTGGGCGTCCAGCAATAGCAAAAACTCAAGATAAGACTCACATAATTCAATGGGTTAGTGCAAAGCTTCAAAAGGGGGATGTCAAATATATAGTTGATCCAAGGTTAAGGGAAGAATTTGATGTAAATTCTGTGTGGAAAGCTGTGGAATTAGCAATGTCTTGTGTTTCACGCACTTCAACTAAGAGGCCTACGATGAATTATGTGGTGATGGAATTAAAAGAATGTTTGGCAGTAGAGATAGCTAACCGCACGGACTCCAAGGATTCGGTTGGATTAATGTCTATGAAGAATCTGGAGAGCGTAATGGGTCCCCGAGCAAGGTAG

Network for GWHGAAZE031000

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	24	339	1.30E-103
PF13855.7	LRR_8	397	453	1.20E-08
PF07714.18	PK_Tyr_Ser-Thr	563	671	2.70E-18
PF00069.26	Pkinase	673	779	9.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-I-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.058
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.032
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.122
	SRR3591710	White floral bud	0.155
	SRR3591711	White flower	0.320
	SRR3591712	Green floral bud	0.039
	SRR3591713	Yellow flower	0.702
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.043
	SRR8316901	Third green stage	0.029
	SRR8316898	Complete white stage	0.044
	SRR8316899	Complete white stage	0.481
	SRR8316903	Complete white stage	0.051
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.020
	SRR8316907	Gold flowering stage	0.055
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.050
	SRR6706287	Light intensity 50%	0.006
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.059
	CNS0095597	Whole white alabastrum(diploid) 4	0.001
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.001
	CNS0095600	Silvery flower (diploied) 3	0.127
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.138
	CNS0095603	Golden flower (diploid) 3	0.315
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.180
	CNS0095611	Silvery flower (diploied) 2	0.093
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.382
	CNS0095614	Golden flower (tetraploid) 2	0.105
	CNS0095615	Golden flower (tetraploid) 3	1.874
CRA001975	CRR073297	Stem 1	0.001
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.001
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.069
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.001
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.022
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.006
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.002
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000