Gene detail

Detail information of GWHGAAZE031118

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011072615.1	0	PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X5 [Sesamum indicum]
COG	YP_722089.1	2E-99	FMN-dependent alpha-hydroxy acid dehydrogenase
Swissprot	tr\|Q9LJH5\|GLO4_ARATH	3E-171	Peroxisomal (S)-2-hydroxy-acid oxidase GLO4
trEMBL	tr\|M1C3L0\|M1C3L0_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400058959}
TAIR10	AT3G14130.1	2E-137	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53549561	53553500	-
GWHAAZE00000009	mRNA	53549561	53553500	-
GWHAAZE00000009	exon	53553436	53553500	-
GWHAAZE00000009	exon	53553156	53553280	-
GWHAAZE00000009	exon	53553027	53553073	-
GWHAAZE00000009	exon	53552880	53552957	-
GWHAAZE00000009	exon	53552620	53552744	-
GWHAAZE00000009	exon	53552437	53552494	-
GWHAAZE00000009	exon	53551548	53551610	-
GWHAAZE00000009	exon	53551033	53551102	-
GWHAAZE00000009	exon	53550612	53550712	-
GWHAAZE00000009	exon	53549906	53550040	-
GWHAAZE00000009	exon	53549561	53549810	-
GWHAAZE00000009	CDS	53553436	53553500	-
GWHAAZE00000009	CDS	53553156	53553280	-
GWHAAZE00000009	CDS	53553027	53553073	-
GWHAAZE00000009	CDS	53552880	53552957	-
GWHAAZE00000009	CDS	53552620	53552744	-
GWHAAZE00000009	CDS	53552437	53552494	-
GWHAAZE00000009	CDS	53551548	53551610	-
GWHAAZE00000009	CDS	53551033	53551102	-
GWHAAZE00000009	CDS	53550612	53550712	-
GWHAAZE00000009	CDS	53549906	53550040	-
GWHAAZE00000009	CDS	53549628	53549810	-
GWHAAZE00000009	three_prime_UTR	53549561	53549627	-

Transcript Sequence
>GWHTAAZE031152 ATGGCAGGTGAGCCGGTCAATGTGAACGAGTTCCAGGAATTAGCAAGGCAAGCCCTTCCTAAGATTATTCGGCCAAGGGTTCTCGTAGATGTGAGCAGAATTGATATGTCAACTACGATATTGGGCTATAAAACTTCAGCTCCCATTATGATAGCCCCAACAGCTATGCATCAGCTTGCGCACCCTGAAGGGGAGGTTGCAACTGCCAGAGCAGCGGCCTCTTGTAACACCATTATGGCATTGTCTTTCACATCTAACTGCTCCATGGAGGAGGTTGCTTCAAGCTGCAATGCTATTCGCTTCTTTCAGTTATATGTATACAAGAAAAGAGACATAGCGAAGTTGATGGTGCAAAGAGCTGAAAGAAACGGATTCAAGGCTATTGTTCTAACTGTTGACACTCCTAGACTTGGTCGAAGGGAGGCAGACATAAAGAACAAAATGATTGCACCGAGATTAAAGAATTTGGAAGGCCTCTTGTCACTTGAAGTTGACACTGATAAGGGTTCCAATCTTGAAGCTTTTGCATCAGAGACCTTAGATGCATCTTTGTGTTGGAAGGATGTAGAGTGGTTAAGGTCCACTACAAAGTTGCCAGTACTGATCAAGGGTGTGCTCACTCATGAAGATGCAATAAAAGCCATGGAGATAGGAGTTGCAGGAATTGTTGTTTCAAATCATGGAGCTCGTCAGCTAGATTATGCTCCGGCCACTATTAATGCTCTTGAAGAGGTGGTGGTTGCAGTTGATGGGAAAATTCCAGTTTTCTTTGATGGTGGATTGAGGCGGGGAACAGATATATTCAAAGCATTAGCTCTTGGTGCAAAAGCTGTTATGGTAGCACATTCAATTCCTAAACTATTTGAAATTGGAAGACCTGTTATATATGGGCTGGCAGTGAAGGGAGAAAAAGGGGTTCGGCAAGTGATTGAAATGCTGAAGGATGAGCTTGAGCTCACAATGGCGCTTGCTGGCTGTTGTAGCCTAAAGGACATTACTAGAAGCCATATCAAGACAGAACAAGAACAGAGAGTCAGATGCATGCTTTAGTCTCATTTTTAAGCATTAGATATAGATTAGAGGCGGTTTATGCGGATGGATGGGCTATATAAATGAA

Network for GWHGAAZE031118

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01070.19	FMN_dh	23	338	3.00E-119

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11517	HAO	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity
GO:0010181	molecular_function	FMN binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.977
	SRR3591706	second leaf	37.936
	SRR3591707	mature leaf	29.758
	SRR3591708	Shoot apex	62.735
	SRR3591709	Stem	60.559
	SRR3591710	White floral bud	43.903
	SRR3591711	White flower	39.995
	SRR3591712	Green floral bud	47.884
	SRR3591713	Yellow flower	29.375
SRP173429	SRR8316895	Juvenile bud stage	29.847
	SRR8316896	Juvenile bud stage	37.394
	SRR8316897	Juvenile bud stage	26.248
	SRR8316894	Third green stage	16.945
	SRR8316900	Third green stage	30.365
	SRR8316901	Third green stage	29.658
	SRR8316898	Complete white stage	11.655
	SRR8316899	Complete white stage	41.636
	SRR8316903	Complete white stage	17.829
	SRR8316902	Silver flowering stage	8.205
	SRR8316904	Silver flowering stage	10.528
	SRR8316905	Silver flowering stage	5.394
	SRR8316906	Gold flowering stage	17.423
	SRR8316907	Gold flowering stage	16.077
	SRR8316908	Gold flowering stage	30.377
SRP132670	SRR6706286	Control	31.599
	SRR6706287	Light intensity 50%	37.030
	SRR6706288	Light intensity 20%	37.654
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.098
	CNS0095593	Slightly white alabastrum(diploid) 2	31.878
	CNS0095594	Slightly white alabastrum(diploid) 3	36.317
	CNS0095595	Whole white alabastrum(diploid) 2	28.456
	CNS0095596	Whole white alabastrum(diploid) 3	20.245
	CNS0095597	Whole white alabastrum(diploid) 4	23.623
	CNS0095598	Silvery flower (diploied) 1	38.885
	CNS0095599	Silvery flower (diploied) 2	32.435
	CNS0095600	Silvery flower (diploied) 3	13.406
	CNS0095601	Golden flower (diploid) 1	35.672
	CNS0095602	Golden flower (diploid) 2	15.163
	CNS0095603	Golden flower (diploid) 3	17.643
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.132
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.866
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.052
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.176
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.436
	CNS0095610	Silvery flower (diploied) 1	18.388
	CNS0095611	Silvery flower (diploied) 2	19.025
	CNS0095612	Silvery flower (diploied) 3	17.378
	CNS0095613	Golden flower (tetraploid) 1	8.856
	CNS0095614	Golden flower (tetraploid) 2	14.420
	CNS0095615	Golden flower (tetraploid) 3	7.643
CRA001975	CRR073297	Stem 1	35.663
	CRR073298	Stem 2	34.697
	CRR073299	Stem 3	24.623
	CRR073300	Leaf 1	29.655
	CRR073301	Leaf 2	32.194
	CRR073302	Leaf 3	22.638
	CRR073303	Juvenile bud 1	19.282
	CRR073304	Juvenile bud 2	12.321
	CRR073305	Juvenile bud 3	17.777
	CRR073306	Third green 1	7.232
	CRR073307	Third green 2	6.281
	CRR073308	Third green 3	7.224
	CRR073309	Second white 1	2.995
	CRR073310	Second white 2	2.749
	CRR073311	Second white 3	3.259
	CRR073312	Silver flowering 1	0.658
	CRR073313	Silver flowering 2	1.057
	CRR073314	Silver flowering 3	0.609
	CRR073315	Gold flowering 1	4.376
	CRR073316	Gold flowering 2	6.498
	CRR073317	Gold flowering 3	5.249
	CRR073318	Tawny withering 1	16.916
	CRR073319	Tawny withering 2	16.627
	CRR073320	Tawny withering 3	14.898