Detail information of GWHGAAZE031136


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007024768.10Alanine aminotransferase 2 [Theobroma cacao]
COGYP_004233744.13E-40aspartate transaminase
Swissprottr|Q9LDV4|ALAT2_ARATH0Alanine aminotransferase 2, mitochondrial (Precursor)
trEMBLtr|A0A061GBY9|A0A061GBY9_THECC0Alanine aminotransferase 2 {ECO:0000313|EMBL:EOY27390.1}
TAIR10AT1G72330.10alanine aminotransferase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5381409553819186-
GWHAAZE00000009mRNA5381409553819186-
GWHAAZE00000009exon5381915253819186-
GWHAAZE00000009exon5381885353818930-
GWHAAZE00000009exon5381832253818418-
GWHAAZE00000009exon5381819053818251-
GWHAAZE00000009exon5381681953816897-
GWHAAZE00000009exon5381661353816717-
GWHAAZE00000009exon5381638353816493-
GWHAAZE00000009exon5381607253816209-
GWHAAZE00000009exon5381583453815908-
GWHAAZE00000009exon5381563853815758-
GWHAAZE00000009exon5381533553815544-
GWHAAZE00000009exon5381493753815046-
GWHAAZE00000009exon5381441653814619-
GWHAAZE00000009exon5381409553814239-
GWHAAZE00000009CDS5381915253819186-
GWHAAZE00000009CDS5381885353818930-
GWHAAZE00000009CDS5381832253818418-
GWHAAZE00000009CDS5381819053818251-
GWHAAZE00000009CDS5381681953816897-
GWHAAZE00000009CDS5381661353816717-
GWHAAZE00000009CDS5381638353816493-
GWHAAZE00000009CDS5381607253816209-
GWHAAZE00000009CDS5381583453815908-
GWHAAZE00000009CDS5381563853815758-
GWHAAZE00000009CDS5381533553815544-
GWHAAZE00000009CDS5381493753815046-
GWHAAZE00000009CDS5381441653814619-
GWHAAZE00000009CDS5381412353814239-
GWHAAZE00000009three_prime_UTR5381409553814122-
Transcript Sequence

Network for GWHGAAZE031136

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00155.22Aminotran_1_21084882.10E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00814GPT, ALT Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Carbon fixation in photosynthetic organismsmap00710
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220

Gene Ontology

GO term OntologyName
GO:0009058biological_processbiosynthetic process
GO:0003824molecular_functioncatalytic activity
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.151
SRR3591706second leaf20.771
SRR3591707mature leaf19.573
SRR3591708Shoot apex6.408
SRR3591709Stem2.334
SRR3591710White floral bud2.057
SRR3591711White flower0.487
SRR3591712Green floral bud6.669
SRR3591713Yellow flower0.840
SRP173429 SRR8316895Juvenile bud stage 10.578
SRR8316896Juvenile bud stage 11.638
SRR8316897Juvenile bud stage 2.962
SRR8316894Third green stage 3.925
SRR8316900Third green stage 8.485
SRR8316901Third green stage 10.139
SRR8316898Complete white stage 2.191
SRR8316899Complete white stage 3.882
SRR8316903Complete white stage 4.355
SRR8316902Silver flowering stage2.868
SRR8316904Silver flowering stage5.106
SRR8316905Silver flowering stage2.560
SRR8316906Gold flowering stage 10.125
SRR8316907Gold flowering stage 11.973
SRR8316908Gold flowering stage 10.453
SRP132670SRR6706286Control4.853
SRR6706287Light intensity 50%5.487
SRR6706288Light intensity 20%5.779
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.682
CNS0095593Slightly white alabastrum(diploid) 24.474
CNS0095594Slightly white alabastrum(diploid) 37.080
CNS0095595Whole white alabastrum(diploid) 23.854
CNS0095596Whole white alabastrum(diploid) 35.322
CNS0095597Whole white alabastrum(diploid) 44.989
CNS0095598Silvery flower (diploied) 11.623
CNS0095599Silvery flower (diploied) 21.656
CNS0095600Silvery flower (diploied) 32.684
CNS0095601Golden flower (diploid) 12.249
CNS0095602Golden flower (diploid) 21.959
CNS0095603Golden flower (diploid) 32.210
CNS0095604Slightly white alabastrum(tetraploid) 11.005
CNS0095605Slightly white alabastrum(tetraploid) 20.757
CNS0095606Slightly white alabastrum(tetraploid) 31.822
CNS0095607Whole white alabastrum(tetraploid) 10.343
CNS0095608Whole white alabastrum(tetraploid) 20.227
CNS0095609Whole white alabastrum(tetraploid) 31.681
CNS0095610Silvery flower (diploied) 11.266
CNS0095611Silvery flower (diploied) 20.471
CNS0095612Silvery flower (diploied) 30.608
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.094
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 19.037
CRR073298Stem 25.293
CRR073299Stem 30.436
CRR073300Leaf 15.267
CRR073301Leaf 25.560
CRR073302Leaf 31.265
CRR073303Juvenile bud 10.768
CRR073304Juvenile bud 20.247
CRR073305Juvenile bud 31.072
CRR073306Third green 10.480
CRR073307Third green 20.180
CRR073308Third green 30.524
CRR073309Second white 10.691
CRR073310Second white 21.023
CRR073311Second white 31.309
CRR073312Silver flowering 10.705
CRR073313Silver flowering 20.599
CRR073314Silver flowering 30.534
CRR073315Gold flowering 10.727
CRR073316Gold flowering 21.355
CRR073317Gold flowering 30.291
CRR073318Tawny withering 10.951
CRR073319Tawny withering 20.660
CRR073320Tawny withering 30.706