Gene detail

Detail information of GWHGAAZE031141

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFV96170.1	2.98514E-83	ubiquitin conjugating enzyme J2 [Camellia oleifera]
Swissprot	tr\|Q9SHI7\|UBC34_ARATH	1E-71	Ubiquitin-conjugating enzyme E2 34
trEMBL	tr\|K7S6F2\|K7S6F2_9ERIC	1E-83	Ubiquitin conjugating enzyme J2 {ECO:0000313\|EMBL:AFV96170.1}
TAIR10	AT1G17280.2	1E-43	ubiquitin-conjugating enzyme 34

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53894352	53896443	+
GWHAAZE00000009	mRNA	53894352	53896443	+
GWHAAZE00000009	exon	53894352	53894388	+
GWHAAZE00000009	exon	53894701	53894784	+
GWHAAZE00000009	exon	53894875	53894914	+
GWHAAZE00000009	exon	53895012	53895039	+
GWHAAZE00000009	exon	53895190	53895281	+
GWHAAZE00000009	exon	53896149	53896443	+
GWHAAZE00000009	CDS	53894352	53894388	+
GWHAAZE00000009	CDS	53894701	53894784	+
GWHAAZE00000009	CDS	53894875	53894914	+
GWHAAZE00000009	CDS	53895012	53895039	+
GWHAAZE00000009	CDS	53895190	53895281	+
GWHAAZE00000009	CDS	53896149	53896443	+

Transcript Sequence
>GWHTAAZE031175 TATGTATTGGAGGGGAGTGAAGGAACACCATTTGCAGACTGGTGTTTCCTTTCCTGTAGCATGACCACTCCCAATGGGCGGTTTATGACACTGAAGAAAATCTGTCTATCTATGAGCGATTTTCATCCAGAACTTTGGAACCCAATGTGGTCTGTGTCAAGCATACTTACAGGGCTTCTCTCATTCATGATGGACACGAGTCCTACCACAGGCAGTGTAACAACTACTGTTGCTGAGAAGAAAAGGCTTGCAAATGCCTCTCTTGCCTTCAATTATAAGAACCCAACATTCAGGAAGTTGTTCCCAGAGTACTTGGAGAAGTATGAAGAGCAGCAGCAGCAGCTGTCTGAGCAGCGTTGTCCAAAGGAGTCCCTAGGAGGACTGAAACAAGAAGAGAGTTCCAGGCCCTTGTTGGAAAAGGTTGGGAAAGTAGACGAGGTGAACAATGGAGTACAAGAAGGCCAAAAGGATGTAAAGAACCAAAGGAGGCAATCATCCATTCCAACGTGGGTGCTTTTGTTACTATTTTCTATATTTGGTGTTATAATGGCCTTACCTTTGCTTCAACTTGGATGA

Network for GWHGAAZE031141

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K04554	UBE2J2, NCUBE2, UBC6	Protein processing in endoplasmic reticulum	map04141
K04554	UBE2J2, NCUBE2, UBC6	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	86.803
	SRR3591706	second leaf	54.677
	SRR3591707	mature leaf	56.589
	SRR3591708	Shoot apex	72.646
	SRR3591709	Stem	109.963
	SRR3591710	White floral bud	62.265
	SRR3591711	White flower	69.152
	SRR3591712	Green floral bud	60.824
	SRR3591713	Yellow flower	78.937
SRP173429	SRR8316895	Juvenile bud stage	53.585
	SRR8316896	Juvenile bud stage	74.526
	SRR8316897	Juvenile bud stage	28.482
	SRR8316894	Third green stage	25.955
	SRR8316900	Third green stage	66.129
	SRR8316901	Third green stage	66.863
	SRR8316898	Complete white stage	27.718
	SRR8316899	Complete white stage	89.743
	SRR8316903	Complete white stage	41.308
	SRR8316902	Silver flowering stage	32.343
	SRR8316904	Silver flowering stage	33.790
	SRR8316905	Silver flowering stage	19.555
	SRR8316906	Gold flowering stage	63.745
	SRR8316907	Gold flowering stage	61.901
	SRR8316908	Gold flowering stage	44.768
SRP132670	SRR6706286	Control	50.007
	SRR6706287	Light intensity 50%	47.310
	SRR6706288	Light intensity 20%	48.392
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	92.163
	CNS0095593	Slightly white alabastrum(diploid) 2	104.030
	CNS0095594	Slightly white alabastrum(diploid) 3	86.006
	CNS0095595	Whole white alabastrum(diploid) 2	79.671
	CNS0095596	Whole white alabastrum(diploid) 3	64.596
	CNS0095597	Whole white alabastrum(diploid) 4	77.390
	CNS0095598	Silvery flower (diploied) 1	100.846
	CNS0095599	Silvery flower (diploied) 2	94.861
	CNS0095600	Silvery flower (diploied) 3	63.329
	CNS0095601	Golden flower (diploid) 1	125.468
	CNS0095602	Golden flower (diploid) 2	82.284
	CNS0095603	Golden flower (diploid) 3	77.545
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.279
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.696
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.619
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.177
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.864
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.619
	CNS0095610	Silvery flower (diploied) 1	43.172
	CNS0095611	Silvery flower (diploied) 2	37.593
	CNS0095612	Silvery flower (diploied) 3	43.543
	CNS0095613	Golden flower (tetraploid) 1	29.776
	CNS0095614	Golden flower (tetraploid) 2	40.628
	CNS0095615	Golden flower (tetraploid) 3	29.635
CRA001975	CRR073297	Stem 1	75.256
	CRR073298	Stem 2	64.327
	CRR073299	Stem 3	61.689
	CRR073300	Leaf 1	66.546
	CRR073301	Leaf 2	72.748
	CRR073302	Leaf 3	68.841
	CRR073303	Juvenile bud 1	64.403
	CRR073304	Juvenile bud 2	56.595
	CRR073305	Juvenile bud 3	70.851
	CRR073306	Third green 1	40.183
	CRR073307	Third green 2	45.264
	CRR073308	Third green 3	38.954
	CRR073309	Second white 1	51.315
	CRR073310	Second white 2	38.270
	CRR073311	Second white 3	25.496
	CRR073312	Silver flowering 1	40.316
	CRR073313	Silver flowering 2	40.689
	CRR073314	Silver flowering 3	25.395
	CRR073315	Gold flowering 1	93.312
	CRR073316	Gold flowering 2	110.904
	CRR073317	Gold flowering 3	83.687
	CRR073318	Tawny withering 1	92.444
	CRR073319	Tawny withering 2	90.775
	CRR073320	Tawny withering 3	91.891