Gene detail

Detail information of GWHGAAZE031151

Functional Annotation

Database	Orthologs	Annotation
Nr	AHB32104.1	phytoene desaturase [Camellia sinensis]
COG	YP_007121896.1	phytoene desaturase
Swissprot	tr\|P28554\|CRTI_SOLLC	Phytoene dehydrogenase, chloroplastic/chromoplastic (Precursor)
trEMBL	tr\|V5RCN3\|V5RCN3_CAMSI	Phytoene desaturase {ECO:0000313\|EMBL:AHB32104.1}
TAIR10	AT4G14210.1	phytoene desaturase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53967054	53972482	+
GWHAAZE00000009	mRNA	53967054	53972482	+
GWHAAZE00000009	exon	53967054	53967263	+
GWHAAZE00000009	exon	53967347	53967479	+
GWHAAZE00000009	exon	53968025	53968113	+
GWHAAZE00000009	exon	53968319	53968376	+
GWHAAZE00000009	exon	53968722	53968877	+
GWHAAZE00000009	exon	53969190	53969338	+
GWHAAZE00000009	exon	53969571	53969690	+
GWHAAZE00000009	exon	53970240	53970453	+
GWHAAZE00000009	exon	53970544	53970646	+
GWHAAZE00000009	exon	53970929	53970976	+
GWHAAZE00000009	exon	53971400	53971445	+
GWHAAZE00000009	exon	53971792	53971979	+
GWHAAZE00000009	exon	53972141	53972303	+
GWHAAZE00000009	exon	53972423	53972482	+
GWHAAZE00000009	CDS	53967054	53967263	+
GWHAAZE00000009	CDS	53967347	53967479	+
GWHAAZE00000009	CDS	53968025	53968113	+
GWHAAZE00000009	CDS	53968319	53968376	+
GWHAAZE00000009	CDS	53968722	53968877	+
GWHAAZE00000009	CDS	53969190	53969338	+
GWHAAZE00000009	CDS	53969571	53969690	+
GWHAAZE00000009	CDS	53970240	53970453	+
GWHAAZE00000009	CDS	53970544	53970646	+
GWHAAZE00000009	CDS	53970929	53970976	+
GWHAAZE00000009	CDS	53971400	53971445	+
GWHAAZE00000009	CDS	53971792	53971979	+
GWHAAZE00000009	CDS	53972141	53972303	+
GWHAAZE00000009	CDS	53972423	53972482	+

Transcript Sequence
>GWHTAAZE031185 ATGTCTCAATTTGGACATGTCTCAGCAGTTAACCTGACCAGCCAAAGTAATATAATAAACCTTTGGAACCCAAAATCTACTTGGAGACGTGGTTCAGGACAAACACATGCACTATCATTTAGAGATGGTGATTGTATGGGTCATAGATTGGAATTTCGAACCACACAAGCTACTACTACAAGATCCAGGAAGGGTGTCTCCCCTTTGAAGGTGGTTTGCATTGATTATCCAAGACCAGAACTGGATAACACTGTCAATTATTTAGAAGCTGCTTACTTCTCGTCGTCCTTCCAAACTGCTCCACGTCCCAATAAACCTTTGGAGATCGTAATTGCTGGAGCAGGTTTGGCTGGTTTGTCTACTGCGAAATATTTGGTGGATGCAGGTCACAAACCCATACTGCTGGAAGCAAGAGATGTCCTAGGCGGAAAGGTGGCGGCTTGGAAAGATGATGATGGAGACTGGTATGAGACGGGCTTACATATATTCTTTGGGGCTTACCCAAATATTCAGAATCTGTTTGGAGAATTAGGTATTAATGACCGATTGCAGTGGAAAGAGCACTCTATGATATTTGCAATGCCAAACAAACCAGGACAGTTCAGCCGATTCGATTTTCCTGAAGTTCTACCCGCCCCAATAAATGGGATTTGGGCAATCTTGAAGAACAATGAAATGCTAACGTGGCCTGAGAAAATCAAGTTTGCAATTGGACTCTTGCCTGCCATTCTTGGTGGACAAGCCTATGTTGAAGCTCAAGATGGATTAAGTGTCAAAGAATGGATGAAAAAGCAGGGTGTACCAGAGCGAGTTACTACTGAGGTGTTTATTGCCATGTCCAAGGCATTAAACTTCATAAACCCAGATGAGCTTTCAATGCAGTGTATTTTGATTGCTTTGAACAGATTTCTTCAGGAGAAGCACGGTTCAAAGATGGCCTTTTTAGATGGTAGCCCTCCAGAGAGGCTTTGCAAGCCTATCGTTGATCATATTCAGTCACTGGGTGGTCAAGTCCGGCTTAATTCGCGAATACAAAAGATTGATCTGAATCAAGATGGAACTGTAAAGAGATTTATACTAAGTAATGGTGATGTAATTAAAGGAGATGCTTACGTAATTGCTGCTCCAGTTGACATCCTGAAGCTTCTTTTACCTGAAGACTGGAAAGACATTCCATACTTCAGGAAATTGGATAAGTTAGTTGGAGTTCCAGTCATAAATGTTCACATATGGTTCGACAGAAAGCTGAAGAACACATATGACCATCTTCTCTTTAGCAGAAGTTCCCTTCTCAGTGTATACGCCGACATGTCTGTAACATGTAAGGAGTATTACGACCCAAATAAGTCTATGTTGGAGTTGGTATTTGCACCAGCAGAAGAATGGATCTCACGGAGTGACTCAGATATTATTGATGCAACAATGAATGAACTCGCAAGACTCTTTCCTGATGAAATATCTGCAGATCAGAGCAAAGCTAAAATATTGAAGTACCATGTTGTTAAAACCCCAAGGTCTGTTTATAAAACCGTTCCAAATTGTGAACCATGCCGGCCCTTGCAAAGATCTCCCATAGAGGGATTCTATTTAGCTGGAGACTATACGAAACAGAAGTATTTGGCCTCGATGGAGGGTGCTGTTTTATCAGGAAAGCTTTGTGCACAAGCCATCGTACAGGATTACGAGAAGCTTGTTGCACGGGAGCAGAAGATGCTGGCTGAGGCAAGCCTAGCCTAA

Network for GWHGAAZE031151

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01593.25	Amino_oxidase	116	557	2.70E-81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02293	PDS, crtP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0016117	biological_process	carotenoid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016166	molecular_function	phytoene dehydrogenase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.591
	SRR3591706	second leaf	47.776
	SRR3591707	mature leaf	61.425
	SRR3591708	Shoot apex	33.959
	SRR3591709	Stem	30.115
	SRR3591710	White floral bud	577.608
	SRR3591711	White flower	765.327
	SRR3591712	Green floral bud	78.153
	SRR3591713	Yellow flower	979.736
SRP173429	SRR8316895	Juvenile bud stage	38.971
	SRR8316896	Juvenile bud stage	54.321
	SRR8316897	Juvenile bud stage	29.101
	SRR8316894	Third green stage	27.337
	SRR8316900	Third green stage	99.441
	SRR8316901	Third green stage	93.059
	SRR8316898	Complete white stage	304.466
	SRR8316899	Complete white stage	152.718
	SRR8316903	Complete white stage	530.012
	SRR8316902	Silver flowering stage	344.512
	SRR8316904	Silver flowering stage	542.415
	SRR8316905	Silver flowering stage	266.052
	SRR8316906	Gold flowering stage	846.701
	SRR8316907	Gold flowering stage	609.570
	SRR8316908	Gold flowering stage	636.116
SRP132670	SRR6706286	Control	113.354
	SRR6706287	Light intensity 50%	126.095
	SRR6706288	Light intensity 20%	105.792
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.480
	CNS0095593	Slightly white alabastrum(diploid) 2	32.869
	CNS0095594	Slightly white alabastrum(diploid) 3	34.206
	CNS0095595	Whole white alabastrum(diploid) 2	38.926
	CNS0095596	Whole white alabastrum(diploid) 3	43.389
	CNS0095597	Whole white alabastrum(diploid) 4	43.229
	CNS0095598	Silvery flower (diploied) 1	206.812
	CNS0095599	Silvery flower (diploied) 2	207.574
	CNS0095600	Silvery flower (diploied) 3	1071.741
	CNS0095601	Golden flower (diploid) 1	299.121
	CNS0095602	Golden flower (diploid) 2	862.498
	CNS0095603	Golden flower (diploid) 3	832.206
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.221
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	79.803
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.588
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.617
	CNS0095609	Whole white alabastrum(tetraploid) 3	125.562
	CNS0095610	Silvery flower (diploied) 1	1063.002
	CNS0095611	Silvery flower (diploied) 2	1442.023
	CNS0095612	Silvery flower (diploied) 3	1603.582
	CNS0095613	Golden flower (tetraploid) 1	912.660
	CNS0095614	Golden flower (tetraploid) 2	1111.303
	CNS0095615	Golden flower (tetraploid) 3	2801.176
CRA001975	CRR073297	Stem 1	83.070
	CRR073298	Stem 2	77.807
	CRR073299	Stem 3	66.458
	CRR073300	Leaf 1	124.743
	CRR073301	Leaf 2	111.065
	CRR073302	Leaf 3	96.451
	CRR073303	Juvenile bud 1	105.643
	CRR073304	Juvenile bud 2	188.770
	CRR073305	Juvenile bud 3	117.229
	CRR073306	Third green 1	656.184
	CRR073307	Third green 2	360.473
	CRR073308	Third green 3	449.159
	CRR073309	Second white 1	755.978
	CRR073310	Second white 2	1015.722
	CRR073311	Second white 3	1130.917
	CRR073312	Silver flowering 1	999.648
	CRR073313	Silver flowering 2	909.584
	CRR073314	Silver flowering 3	852.502
	CRR073315	Gold flowering 1	57.728
	CRR073316	Gold flowering 2	91.435
	CRR073317	Gold flowering 3	37.060
	CRR073318	Tawny withering 1	18.292
	CRR073319	Tawny withering 2	18.340
	CRR073320	Tawny withering 3	16.984