Gene detail

Detail information of GWHGAAZE031155

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97764.1	3.3017E-142	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TPB3\|A0A068TPB3_COFCA	1E-142	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97764.1}
TAIR10	AT3G21215.1	4E-86	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54054436	54057457	+
GWHAAZE00000009	mRNA	54054436	54057457	+
GWHAAZE00000009	exon	54054436	54054552	+
GWHAAZE00000009	exon	54054662	54054841	+
GWHAAZE00000009	exon	54054955	54055030	+
GWHAAZE00000009	exon	54056344	54056473	+
GWHAAZE00000009	exon	54056659	54056773	+
GWHAAZE00000009	exon	54056978	54057069	+
GWHAAZE00000009	exon	54057182	54057251	+
GWHAAZE00000009	exon	54057359	54057457	+
GWHAAZE00000009	CDS	54054436	54054552	+
GWHAAZE00000009	CDS	54054662	54054841	+
GWHAAZE00000009	CDS	54054955	54055030	+
GWHAAZE00000009	CDS	54056344	54056473	+
GWHAAZE00000009	CDS	54056659	54056773	+
GWHAAZE00000009	CDS	54056978	54057069	+
GWHAAZE00000009	CDS	54057182	54057251	+
GWHAAZE00000009	CDS	54057359	54057457	+

Transcript Sequence
>GWHTAAZE031189 ATGGCTGGTACTGGAATCCACCCCTACCATCATCATCATCAGCATCAGCAGCAGCAGCAATGGCCTCCAGCACCAGCCCCTCCTCCTACCATGCCCATTATCAATCCCACCGACGAGGTTCGGACGGTGTTCATATCAGGTCTACCGGAGGACGTGAAGGAGAGAGAATTACAGAACCTTTTGAGATGGTTGCCTGGTTACGAGGCTTCTCACCTCAACTTCAAAGCTCAACACCCCTTGGCTTTTGCTCTCTTCTCTACTCCTCATTTTGCTCTTTCTGCCAAACATGCCCTTCAGGACATGGTATTTGATGCCGAATCCAAGTCCGTGTTGCACACTGAGATGGCTAAGAAAAATCTCTTTGTCAAAAGGGGAATTGTAACTGATCCTGATGCTTATGATCAGAGTAAACGAATGCGAACTGGTGGTGATTATGCGCAAGCTGGTTATTCAAGCCCATCTCCTTTTCACCCTCCCCCTCCACCTGTTTGGGGCCCACACGCATATATTTCTCCTGCTCCTCCACCTTTTGATCCATATGGAGGCTATGCTGTTCCACCGGTGCCTATGCCTGCTCCTGCTCCCATACTAGCACCAAGCAGTTATGTACCTATTCAGAATACTAAAGATAACCCTCCTTGCAATACCCTATTTATTGGCAATCTTGGAGAGAACATGAATGAGGAAGAGCTGAGAGGCATTTTCACTGTACAACCTGGTTTTAAGCAGATGAAGATCTTGAGACAGGAAAGGCACACTGTTTGCTTTATTGAATTTGAAGACATGAATACTGCTACCAATGTGCACCATAGCTTGCAGGGTGCTGTTATACCTAGTTCAGGCTCTATTGGCATGCGAATACAATATCCTTTTGAGTAA

Network for GWHGAAZE031155

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0245	map03022 Basal transcription factors GO:0005685 U1 snRNP GOslim:cellular_component GO:0005669 transcription factor TFIID complex GOslim:cellular_component GO:0006376 mRNA splice site selection GOslim:biological_process GO:0006352 DNA-templated transcription, initiation GOslim:biological_process GO:0003676 nucleic acid binding GOslim:molecular_function GO:0003729 mRNA binding GOslim:molecular_function map03040 Spliceosome map04657 IL-17 signaling pathway

Module ID

Function Annotation

CFinderModule0245

map03022 Basal transcription factors
GO:0005685 U1 snRNP GOslim:cellular_component
GO:0005669 transcription factor TFIID complex GOslim:cellular_component
GO:0006376 mRNA splice site selection GOslim:biological_process
GO:0006352 DNA-templated transcription, initiation GOslim:biological_process
GO:0003676 nucleic acid binding GOslim:molecular_function
GO:0003729 mRNA binding GOslim:molecular_function
map03040 Spliceosome
map04657 IL-17 signaling pathway

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	217	278	1.20E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.407
	SRR3591706	second leaf	8.353
	SRR3591707	mature leaf	12.347
	SRR3591708	Shoot apex	14.204
	SRR3591709	Stem	17.635
	SRR3591710	White floral bud	16.019
	SRR3591711	White flower	10.950
	SRR3591712	Green floral bud	11.178
	SRR3591713	Yellow flower	7.964
SRP173429	SRR8316895	Juvenile bud stage	27.337
	SRR8316896	Juvenile bud stage	32.235
	SRR8316897	Juvenile bud stage	17.173
	SRR8316894	Third green stage	14.259
	SRR8316900	Third green stage	25.970
	SRR8316901	Third green stage	28.345
	SRR8316898	Complete white stage	16.978
	SRR8316899	Complete white stage	46.895
	SRR8316903	Complete white stage	36.500
	SRR8316902	Silver flowering stage	15.521
	SRR8316904	Silver flowering stage	29.064
	SRR8316905	Silver flowering stage	10.265
	SRR8316906	Gold flowering stage	22.340
	SRR8316907	Gold flowering stage	28.357
	SRR8316908	Gold flowering stage	25.400
SRP132670	SRR6706286	Control	36.336
	SRR6706287	Light intensity 50%	41.276
	SRR6706288	Light intensity 20%	42.741
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.100
	CNS0095593	Slightly white alabastrum(diploid) 2	12.330
	CNS0095594	Slightly white alabastrum(diploid) 3	12.394
	CNS0095595	Whole white alabastrum(diploid) 2	10.268
	CNS0095596	Whole white alabastrum(diploid) 3	9.963
	CNS0095597	Whole white alabastrum(diploid) 4	12.167
	CNS0095598	Silvery flower (diploied) 1	22.592
	CNS0095599	Silvery flower (diploied) 2	13.620
	CNS0095600	Silvery flower (diploied) 3	9.637
	CNS0095601	Golden flower (diploid) 1	16.794
	CNS0095602	Golden flower (diploid) 2	16.589
	CNS0095603	Golden flower (diploid) 3	13.824
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.642
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.125
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.569
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.948
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.136
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.674
	CNS0095610	Silvery flower (diploied) 1	27.236
	CNS0095611	Silvery flower (diploied) 2	13.543
	CNS0095612	Silvery flower (diploied) 3	28.578
	CNS0095613	Golden flower (tetraploid) 1	11.084
	CNS0095614	Golden flower (tetraploid) 2	19.008
	CNS0095615	Golden flower (tetraploid) 3	13.090
CRA001975	CRR073297	Stem 1	41.195
	CRR073298	Stem 2	38.877
	CRR073299	Stem 3	10.072
	CRR073300	Leaf 1	48.918
	CRR073301	Leaf 2	47.264
	CRR073302	Leaf 3	10.834
	CRR073303	Juvenile bud 1	10.466
	CRR073304	Juvenile bud 2	3.057
	CRR073305	Juvenile bud 3	16.737
	CRR073306	Third green 1	3.860
	CRR073307	Third green 2	4.010
	CRR073308	Third green 3	5.326
	CRR073309	Second white 1	4.891
	CRR073310	Second white 2	3.313
	CRR073311	Second white 3	1.789
	CRR073312	Silver flowering 1	2.649
	CRR073313	Silver flowering 2	2.255
	CRR073314	Silver flowering 3	0.149
	CRR073315	Gold flowering 1	2.965
	CRR073316	Gold flowering 2	5.757
	CRR073317	Gold flowering 3	3.572
	CRR073318	Tawny withering 1	10.758
	CRR073319	Tawny withering 2	13.278
	CRR073320	Tawny withering 3	10.790