Gene detail

Detail information of GWHGAAZE031191

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009800258.1	0	PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Nicotiana sylvestris]
COG	YP_007319680.1	4E-54	protoheme IX farnesyltransferase
Swissprot	tr\|O64886\|COX10_ARATH	4E-161	Protoheme IX farnesyltransferase, mitochondrial (Precursor)
trEMBL	tr\|M0ZN21\|M0ZN21_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400004195}
TAIR10	AT2G44520.1	2E-123	cytochrome c oxidase 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54724616	54730932	+
GWHAAZE00000009	mRNA	54724616	54730932	+
GWHAAZE00000009	exon	54724616	54724906	+
GWHAAZE00000009	exon	54726585	54726722	+
GWHAAZE00000009	exon	54726854	54726987	+
GWHAAZE00000009	exon	54727766	54727891	+
GWHAAZE00000009	exon	54728597	54728700	+
GWHAAZE00000009	exon	54730268	54730932	+
GWHAAZE00000009	CDS	54724616	54724906	+
GWHAAZE00000009	CDS	54726585	54726722	+
GWHAAZE00000009	CDS	54726854	54726987	+
GWHAAZE00000009	CDS	54727766	54727891	+
GWHAAZE00000009	CDS	54728597	54728700	+
GWHAAZE00000009	CDS	54730268	54730656	+
GWHAAZE00000009	three_prime_UTR	54730657	54730932	+

Transcript Sequence
>GWHTAAZE031225 ATGCTCATGGAAAATAATTCCTCTTGTAATTTGTCTTTCTGCCATGTCAAATTGGATTGTACTTTTTTCTGTCATCCTTCTTTCTGTGAGCCAATTTCGTTATTGTTTTATTTAATACCAAATCCTATATTGTACTTTTTCTTTATACACATGCTTTCCAGTATGTTAGTTGTTGCTACTTCCGGAGCTGGATATGTTCTTGGGAGTGGCAATGCTGTTGACATTGCTGGGCTCTGCTGCACTTGTGCTGGTACTATGATGGTTGCAGCAGCTGCTAACTCCTTAAATCAGGTGTTTGAGATTAGGAACGATGCCTTAATGAAGAGAACAATGCGGAGACCATTACCTTCAGGGCGTCTGTCAAAACCTCATGCAGTCATCTGGGCATCTTCTGTTGGTTTAGCAGGAACTGCTTTGCTGGCATGCCAGGCGAATATGTTGGCAGCTGGGTTAGCAGCTTCTAATCTCGTTCTCTATGCATTTGTATACACTCCTTTGAAGCAGATACATCCCATAAATACTTGGGTTGGTGCTGTTGTTGGTGCTATTCCACCCCTTCTTGGTTGGGCTGCGGCTTCTGGTCAGGTTTCACTTAATGCAATGATTCTCCCAGCTGCGCTCTACTTTTGGCAACTGCCACATTTTATGGCCCTCGCATATATATGTCGTGAAGACTATGCTGTTGGAGGGTTCAGGATGTTCTCTCTTGCTGATCCTTCAGGTCAGAGAACAGCTTTGGTGGCTTTGAGGAACTGCATATATCTTCTTCCATTGGGGTATCTGGCCTATGATTGGGGTATAACATCAGGATGGTTTTGCCTGGAATCAACACTCCTCGCCCTTGCAATTAGTGGAACCGCGGTCTCATTCTACTTAAACCGTACGACCAAAAACGCACGTAGAATGTTCCATGCAAGCCTTCTTTACCTTCCCGTATTTATGTCCGGCCTAATGTTTCACCGTCTCTCCGATAACACCCAGCGCGTCTCCCTCGAAAATTCAGACAAGGTCATTGAGAGCTCTTCTTCTTTGGGAACTTACCTACGAGAGGGTGAAACTATTGATGAACAACAAAACAAGGTGAAACGTGCATGTGCCAGTGCTCAAGGCCGTCCGCCTGTTGCATTTGCTTCGGTTGCACCGTTTCCATTTTTGCCTGCCCCAGCATATGTTTCCTCGTGATTTTCTTGAATGTTTCAGATTATTTATGTTTCTCCTTTTGAATAAAGAGATGTAACAATAGATTGGTCACCCCGAGTTTTCCGGTTTATGTGCTGCATTTTCCTGCCACTCGTCTGGGGTGGAATCATTAATGTTTCGTGGCTGTCATTTGCATGAATTATGCAAGCGTTCAAATTTGATTCTTCATTTTGGAGGAGAAATTGTGCTAAATATCAATGCCCGAGTTCTTTTGTTAATGTGCGTAATAGGGTGAGAGTCAAATTGTCAGCATTTGAA

Network for GWHGAAZE031191

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01040.19	UbiA	58	306	2.50E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02257	COX10, ctaB, cyoE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Oxidative phosphorylation	map00190
		Porphyrin and chlorophyll metabolism	map00860
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0048034	biological_process	heme O biosynthetic process
GO:0016021	cellular_component	integral component of membrane
GO:0008495	molecular_function	protoheme IX farnesyltransferase activity
GO:0016765	molecular_function	transferase activity, transferring alkyl or aryl (other than methyl) groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.668
	SRR3591706	second leaf	11.584
	SRR3591707	mature leaf	9.800
	SRR3591708	Shoot apex	21.473
	SRR3591709	Stem	19.839
	SRR3591710	White floral bud	32.332
	SRR3591711	White flower	51.328
	SRR3591712	Green floral bud	40.595
	SRR3591713	Yellow flower	52.928
SRP173429	SRR8316895	Juvenile bud stage	15.734
	SRR8316896	Juvenile bud stage	25.258
	SRR8316897	Juvenile bud stage	9.183
	SRR8316894	Third green stage	9.301
	SRR8316900	Third green stage	45.412
	SRR8316901	Third green stage	45.101
	SRR8316898	Complete white stage	21.199
	SRR8316899	Complete white stage	43.729
	SRR8316903	Complete white stage	28.562
	SRR8316902	Silver flowering stage	24.914
	SRR8316904	Silver flowering stage	27.902
	SRR8316905	Silver flowering stage	15.414
	SRR8316906	Gold flowering stage	60.565
	SRR8316907	Gold flowering stage	65.346
	SRR8316908	Gold flowering stage	78.792
SRP132670	SRR6706286	Control	28.049
	SRR6706287	Light intensity 50%	26.820
	SRR6706288	Light intensity 20%	28.970
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.347
	CNS0095593	Slightly white alabastrum(diploid) 2	30.001
	CNS0095594	Slightly white alabastrum(diploid) 3	29.276
	CNS0095595	Whole white alabastrum(diploid) 2	34.072
	CNS0095596	Whole white alabastrum(diploid) 3	37.258
	CNS0095597	Whole white alabastrum(diploid) 4	32.138
	CNS0095598	Silvery flower (diploied) 1	24.052
	CNS0095599	Silvery flower (diploied) 2	31.966
	CNS0095600	Silvery flower (diploied) 3	63.609
	CNS0095601	Golden flower (diploid) 1	34.008
	CNS0095602	Golden flower (diploid) 2	59.313
	CNS0095603	Golden flower (diploid) 3	56.150
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.469
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.297
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.930
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.260
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.530
	CNS0095609	Whole white alabastrum(tetraploid) 3	54.145
	CNS0095610	Silvery flower (diploied) 1	78.622
	CNS0095611	Silvery flower (diploied) 2	70.443
	CNS0095612	Silvery flower (diploied) 3	88.283
	CNS0095613	Golden flower (tetraploid) 1	63.729
	CNS0095614	Golden flower (tetraploid) 2	71.890
	CNS0095615	Golden flower (tetraploid) 3	77.889
CRA001975	CRR073297	Stem 1	39.435
	CRR073298	Stem 2	35.173
	CRR073299	Stem 3	43.471
	CRR073300	Leaf 1	55.238
	CRR073301	Leaf 2	57.137
	CRR073302	Leaf 3	60.475
	CRR073303	Juvenile bud 1	65.224
	CRR073304	Juvenile bud 2	75.145
	CRR073305	Juvenile bud 3	62.534
	CRR073306	Third green 1	73.043
	CRR073307	Third green 2	60.488
	CRR073308	Third green 3	53.845
	CRR073309	Second white 1	136.935
	CRR073310	Second white 2	78.103
	CRR073311	Second white 3	75.465
	CRR073312	Silver flowering 1	104.037
	CRR073313	Silver flowering 2	130.282
	CRR073314	Silver flowering 3	104.633
	CRR073315	Gold flowering 1	19.757
	CRR073316	Gold flowering 2	19.858
	CRR073317	Gold flowering 3	17.120
	CRR073318	Tawny withering 1	39.266
	CRR073319	Tawny withering 2	32.353
	CRR073320	Tawny withering 3	33.797