Gene detail

Detail information of GWHGAAZE031218

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354655.1	0	PREDICTED: putative casein kinase II subunit beta-4-like [Solanum tuberosum]
Swissprot	tr\|P40228\|CSK2B_ARATH	5E-161	Casein kinase II subunit beta
trEMBL	tr\|M0ZNA5\|M0ZNA5_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400004353}
TAIR10	AT2G44680.1	3E-117	casein kinase II beta subunit 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55209898	55215864	-
GWHAAZE00000009	mRNA	55209898	55215864	-
GWHAAZE00000009	exon	55209898	55210028	-
GWHAAZE00000009	exon	55210805	55210970	-
GWHAAZE00000009	exon	55211083	55211192	-
GWHAAZE00000009	exon	55211987	55212205	-
GWHAAZE00000009	exon	55215603	55215864	-
GWHAAZE00000009	CDS	55215603	55215864	-
GWHAAZE00000009	CDS	55211987	55212205	-
GWHAAZE00000009	CDS	55211083	55211192	-
GWHAAZE00000009	CDS	55210805	55210970	-
GWHAAZE00000009	CDS	55209898	55210028	-

Transcript Sequence
>GWHTAAZE031252 ATGTACAGGGAAAGAGGAGGTGGAGGATCGTCGTTGGATCGGAAGAGAATCAACGATGCGTTAGACAAGCACTTGGAGAAGTCTTCGCCTTCGACTTCGAGAGTTTTGAATTCAAGCATCAAGGACAAGGACAAGGAGAGATTCTCTATGCCTTCGACTTCTACAGCAGCTGGCCTTGCCAAATCGCAGCACCAGTTAGAGCAGCATCGTGGTGATAATCGCTCATCGTCGACTCTCACTACCAAGAACAAATGCTCCGAGGAGGAATCAGAAACAGACAGTGAAGAATCTGACGTTAGTGGTTCTGATGGAGATGACACCTCTTGGATTTCATGGTTCTGCAATTTGAGAGGAAATGAATTCTTTTGTGAAGTTGACGATGAGTACATCCAAGATGATTTCAATCTGTGTGGGCTAAGCAGTCAAGTTCCTTATTATGATTATGCACTCGATTTAATTCTGGATGTTGAATCCTCTCATGGAGATATGTTCACTGAAGAACAGAATGAATTGGTTGAATCAGCAGCAGAGATGTTGTATGGTCTGATTCATGTCCGATACATATTGACCACCAAGGGAATGGCTGCTATGTTAGAGAAGTACAAAAACTACGACTTTGGGAGGTGCCCAAGAGTTTACTGCTGCGGACAGCCCTGCCTTCCAGTGGGTCAATCAGACATTCCGCGTTCAAGCACAGTAAAAATATACTGTCCAAAATGCGAAGATATTTATTATCCTCGATCCAAGTACCAAGGCAATATCGATGGGGCATATTTTGGAACCACATTTCCTCATCTGTTTTTGATGACTTATGGGCACCTCAAGCCGCAAAAGGCAACACAGAGCTATGTTCCTCGGGTCTTCGGTTTCAAGCTCCACAAGCCTTGA

Network for GWHGAAZE031218

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01214.19	CK_II_beta	108	291	1.90E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03115	CSNK2B	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005956	cellular_component	protein kinase CK2 complex
GO:0019887	molecular_function	protein kinase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.097
	SRR3591706	second leaf	33.545
	SRR3591707	mature leaf	36.635
	SRR3591708	Shoot apex	53.640
	SRR3591709	Stem	70.153
	SRR3591710	White floral bud	68.380
	SRR3591711	White flower	78.072
	SRR3591712	Green floral bud	66.953
	SRR3591713	Yellow flower	74.717
SRP173429	SRR8316895	Juvenile bud stage	34.296
	SRR8316896	Juvenile bud stage	50.287
	SRR8316897	Juvenile bud stage	20.307
	SRR8316894	Third green stage	22.387
	SRR8316900	Third green stage	55.156
	SRR8316901	Third green stage	54.368
	SRR8316898	Complete white stage	33.344
	SRR8316899	Complete white stage	82.017
	SRR8316903	Complete white stage	51.173
	SRR8316902	Silver flowering stage	31.316
	SRR8316904	Silver flowering stage	42.991
	SRR8316905	Silver flowering stage	23.080
	SRR8316906	Gold flowering stage	84.467
	SRR8316907	Gold flowering stage	68.839
	SRR8316908	Gold flowering stage	79.766
SRP132670	SRR6706286	Control	49.936
	SRR6706287	Light intensity 50%	51.628
	SRR6706288	Light intensity 20%	57.363
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.702
	CNS0095593	Slightly white alabastrum(diploid) 2	39.356
	CNS0095594	Slightly white alabastrum(diploid) 3	33.966
	CNS0095595	Whole white alabastrum(diploid) 2	36.972
	CNS0095596	Whole white alabastrum(diploid) 3	40.128
	CNS0095597	Whole white alabastrum(diploid) 4	37.613
	CNS0095598	Silvery flower (diploied) 1	40.470
	CNS0095599	Silvery flower (diploied) 2	30.468
	CNS0095600	Silvery flower (diploied) 3	62.972
	CNS0095601	Golden flower (diploid) 1	34.990
	CNS0095602	Golden flower (diploid) 2	56.195
	CNS0095603	Golden flower (diploid) 3	52.969
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.209
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.075
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.346
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.891
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.275
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.943
	CNS0095610	Silvery flower (diploied) 1	53.641
	CNS0095611	Silvery flower (diploied) 2	52.474
	CNS0095612	Silvery flower (diploied) 3	50.782
	CNS0095613	Golden flower (tetraploid) 1	40.010
	CNS0095614	Golden flower (tetraploid) 2	51.058
	CNS0095615	Golden flower (tetraploid) 3	61.147
CRA001975	CRR073297	Stem 1	46.418
	CRR073298	Stem 2	39.035
	CRR073299	Stem 3	49.193
	CRR073300	Leaf 1	48.382
	CRR073301	Leaf 2	44.891
	CRR073302	Leaf 3	42.296
	CRR073303	Juvenile bud 1	48.786
	CRR073304	Juvenile bud 2	40.961
	CRR073305	Juvenile bud 3	48.236
	CRR073306	Third green 1	29.984
	CRR073307	Third green 2	27.068
	CRR073308	Third green 3	30.134
	CRR073309	Second white 1	32.341
	CRR073310	Second white 2	40.941
	CRR073311	Second white 3	39.727
	CRR073312	Silver flowering 1	38.411
	CRR073313	Silver flowering 2	49.614
	CRR073314	Silver flowering 3	39.411
	CRR073315	Gold flowering 1	27.175
	CRR073316	Gold flowering 2	30.354
	CRR073317	Gold flowering 3	33.182
	CRR073318	Tawny withering 1	46.727
	CRR073319	Tawny withering 2	39.820
	CRR073320	Tawny withering 3	52.963