Gene detail

Detail information of GWHGAAZE031241

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002511582.1	2.478E-171	triacylglycerol lipase, putative [Ricinus communis]
COG	YP_007071863.1	4E-13	lipase class 3
Swissprot	tr\|Q948R1\|PLA11_ARATH	3E-165	Phospholipase A(1) DAD1, chloroplastic (Precursor)
trEMBL	tr\|B9RCZ3\|B9RCZ3_RICCO	9E-172	Triacylglycerol lipase, putative {ECO:0000313\|EMBL:EEF50251.1}
TAIR10	AT2G44810.1	2E-133	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55621959	55623035	+
GWHAAZE00000009	mRNA	55621959	55623035	+
GWHAAZE00000009	exon	55621959	55622068	+
GWHAAZE00000009	exon	55622102	55622755	+
GWHAAZE00000009	exon	55622822	55623035	+
GWHAAZE00000009	CDS	55621959	55622068	+
GWHAAZE00000009	CDS	55622102	55622755	+
GWHAAZE00000009	CDS	55622822	55623035	+

Transcript Sequence
>GWHTAAZE031275 ATGGAATATCAAGGCCTCAACAATTGGGAAGGTTTGCTTGATCCACTCGACGATAATTTACGCGCCGAGCTCATTCGGTACGGTCACTTTGTCGAATCCACGTACCAGTCAATGTCCCGGTTCCCGAGGATCTCGTTACTCGAACGGACGGGGTACCAAAATACAGGTTACCGGGTCACGAGGAACTTGTGGGCCACCTCAGGTATTCAGTTACCGCGTTGGATGGAAAGGGCCCCGAGTTGGGTGGGGACCCAGTCTAGCTGGATTGGTTATGTGGCAGTTTGTGATGAGAAGGAGGAGATCTCGAGGCTTGGACGTCGAGACGTGGTGGTTGCCCTACGTGGGACTGCTACCTGCCTAGAGTGGCTCGAGAACTTAAGAGCTACTTTGACACAGGTCCCTGGTTCAAGACCAGACCGGTGTATACCAATGGTGGAGAGTGGGTTTTTGAGCTTGTACACCTCGGGCACTAAGTCTTTCCCGAGTTTACAAGTTCTTGTAAGAGAAGAAATCCACAAGATTCTTCAAATGTACGGGGATGAGCCCCTCAGCTTGACCATTACTGGCCATTCTCTCGGAGCAGCCCTAGCAATCTTGGCTGCGTACGATATCAAGTCAACGTTTAATAGGACACCACTTGTCACCGTTATCTCATTTGGGGGTCCAAGGGTAGGGAACCGGAGCTTCCGAGCCCACATTGAAAAACAAGGCACTAGAATTTTGCGCATAGTAAACTCGGACGACATCATTACGAAAGTACCTGGGATCCAACAACGCGTAGAGGACACGCAGTGGGTGTATGCAGACGTGGGGTGCGAGCTCCGGCTTAGCAGCAGAGACTCGCCGTACCACAACGGGATGAATGTGGCAACATGCCACGACTTGAAGACGTACCTACATTTGGTGAATGGATTTGTGAGCTCCAGGTGTCCATATAGGAGTACGGAAAGTAGGGTTATGAAGAAATCTATGGTCTAA

Network for GWHGAAZE031241

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01764.26	Lipase_3	110	257	1.40E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16818	DAD1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.875
	SRR3591711	White flower	24.479
	SRR3591712	Green floral bud	2.567
	SRR3591713	Yellow flower	28.322
SRP173429	SRR8316895	Juvenile bud stage	0.262
	SRR8316896	Juvenile bud stage	0.250
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.120
	SRR8316900	Third green stage	1.758
	SRR8316901	Third green stage	2.460
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	8.877
	SRR8316904	Silver flowering stage	12.212
	SRR8316905	Silver flowering stage	8.234
	SRR8316906	Gold flowering stage	28.185
	SRR8316907	Gold flowering stage	37.807
	SRR8316908	Gold flowering stage	25.833
SRP132670	SRR6706286	Control	1.689
	SRR6706287	Light intensity 50%	1.665
	SRR6706288	Light intensity 20%	1.651
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.937
	CNS0095593	Slightly white alabastrum(diploid) 2	1.686
	CNS0095594	Slightly white alabastrum(diploid) 3	1.677
	CNS0095595	Whole white alabastrum(diploid) 2	3.611
	CNS0095596	Whole white alabastrum(diploid) 3	6.936
	CNS0095597	Whole white alabastrum(diploid) 4	6.396
	CNS0095598	Silvery flower (diploied) 1	0.680
	CNS0095599	Silvery flower (diploied) 2	1.296
	CNS0095600	Silvery flower (diploied) 3	3.310
	CNS0095601	Golden flower (diploid) 1	1.022
	CNS0095602	Golden flower (diploid) 2	6.861
	CNS0095603	Golden flower (diploid) 3	6.323
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.782
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.044
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.526
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.285
	CNS0095610	Silvery flower (diploied) 1	3.259
	CNS0095611	Silvery flower (diploied) 2	6.397
	CNS0095612	Silvery flower (diploied) 3	74.142
	CNS0095613	Golden flower (tetraploid) 1	19.874
	CNS0095614	Golden flower (tetraploid) 2	4.189
	CNS0095615	Golden flower (tetraploid) 3	20.430
CRA001975	CRR073297	Stem 1	0.606
	CRR073298	Stem 2	0.251
	CRR073299	Stem 3	0.537
	CRR073300	Leaf 1	3.119
	CRR073301	Leaf 2	2.224
	CRR073302	Leaf 3	1.118
	CRR073303	Juvenile bud 1	4.061
	CRR073304	Juvenile bud 2	2.475
	CRR073305	Juvenile bud 3	0.420
	CRR073306	Third green 1	193.577
	CRR073307	Third green 2	113.146
	CRR073308	Third green 3	116.621
	CRR073309	Second white 1	354.430
	CRR073310	Second white 2	307.733
	CRR073311	Second white 3	295.269
	CRR073312	Silver flowering 1	232.558
	CRR073313	Silver flowering 2	308.419
	CRR073314	Silver flowering 3	218.517
	CRR073315	Gold flowering 1	0.348
	CRR073316	Gold flowering 2	0.447
	CRR073317	Gold flowering 3	0.043
	CRR073318	Tawny withering 1	0.532
	CRR073319	Tawny withering 2	0.316
	CRR073320	Tawny withering 3	0.552