Gene detail

Detail information of GWHGAAZE031268

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP28817.1	0	hypothetical protein JCGZ_14588 [Jatropha curcas]
COG	YP_006915659.1	2E-111	malate dehydrogenase
Swissprot	tr\|Q7XDC8\|MDHC_ORYSJ	0	Malate dehydrogenase, cytoplasmic
trEMBL	tr\|A0A067JY62\|A0A067JY62_JATCU	0	Malate dehydrogenase {ECO:0000256\|RuleBase:RU003405}
TAIR10	AT5G43330.1	3E-144	Lactate/malate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56189738	56192225	+
GWHAAZE00000009	mRNA	56189738	56192225	+
GWHAAZE00000009	exon	56189738	56189870	+
GWHAAZE00000009	exon	56189974	56190149	+
GWHAAZE00000009	exon	56190340	56190617	+
GWHAAZE00000009	exon	56191090	56191225	+
GWHAAZE00000009	exon	56191342	56191453	+
GWHAAZE00000009	exon	56192131	56192225	+
GWHAAZE00000009	CDS	56189738	56189870	+
GWHAAZE00000009	CDS	56189974	56190149	+
GWHAAZE00000009	CDS	56190340	56190617	+
GWHAAZE00000009	CDS	56191090	56191225	+
GWHAAZE00000009	CDS	56191342	56191453	+
GWHAAZE00000009	CDS	56192131	56192225	+

Transcript Sequence
>GWHTAAZE031302 ATGATCGCTAGAGGAGCAATGTTAGGTCCTAATCAGCCCGTAATCCTACACATGCTTGATATTGAACCTGCTGCTGAGGCCTTGAAAGGGTTAAAAATGGAATTGATAGATGCAGCCTTTCCTCTTCTCCGAGGGGTTGTTGCCACTACTGATGTGGTAGAAGCTTGTAAAGGTGTCAATATTGCAATTATGGTTGGCGGCTTCCCTCGTAAAGAAGGTATGGAGAGGAAGGATGTTATGTCCAAGAATGTTTCCATATACAAGGCTCAAGCTTCAGCCTTGGAGCAGCATGCTGCCTCAAATTGCAAGGTGCTAGTGGTAGCTAACCCAGCAAACACCAACGCGCTTATCTTGAAAGAATTTGCACCTTCAATCCCGGAGGAGAACATCACATGCCTTACAAGGCTCGATCACAACAGAGCCTTAGGCCAAATCTCAGAGAGGCTAAATGTTCAAGTTAATGATGTGAAGAACGTTATCATATGGGGAAATCACTCATCAACTCAATATCCAGACGTCAACCATGCGACAGTTACCATAGGCAGTGTACAGAAGCCTGTTAGAGAACTTGTTGCCAATGATAATTGGTTGAACACCGAGTTCATCACCATCGTGCAGCAGCGTGGGGCAGCCATCATCAAAGCCCGGAAGCTATCCAGCGCATTATCTGCTGCTAGCTCAGCGTGTGATCATGTACGGGATTGGGTTCTTGGCACTCCCAAGGGAACATGGGCGTCAATGGGAGTATATTCTGATGGGTCTTATGGAATCCAGCCAGGCCTTATTTACTCCTTCCCTGTAACTTGTGAAAAAGGAGAATGGTCTATTGTGCAAGGGCTGAAGATAAATGAGTTTTCAAGGGGGAAGATGGATGCCAGTGCAAAAGAGCTCATTGAGGAGAAATCTTTGGCCTATTCATGCCTCAACTAA

Network for GWHGAAZE031268

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00056.24	Ldh_1_N	16	130	5.20E-26
PF02866.19	Ldh_1_C	134	302	1.10E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00025	MDH1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation in photosynthetic organisms	map00710
		Cysteine and methionine metabolism	map00270
		Proximal tubule bicarbonate reclamation	map04964

Gene Ontology

GO term	Ontology	Name
GO:0006108	biological_process	malate metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0030060	molecular_function	L-malate dehydrogenase activity
GO:0016615	molecular_function	malate dehydrogenase activity
GO:0003824	molecular_function	catalytic activity
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.163
	SRR3591706	second leaf	41.095
	SRR3591707	mature leaf	17.521
	SRR3591708	Shoot apex	16.240
	SRR3591709	Stem	9.782
	SRR3591710	White floral bud	3.348
	SRR3591711	White flower	2.732
	SRR3591712	Green floral bud	11.770
	SRR3591713	Yellow flower	0.846
SRP173429	SRR8316895	Juvenile bud stage	18.043
	SRR8316896	Juvenile bud stage	31.054
	SRR8316897	Juvenile bud stage	10.869
	SRR8316894	Third green stage	6.551
	SRR8316900	Third green stage	11.870
	SRR8316901	Third green stage	14.397
	SRR8316898	Complete white stage	0.956
	SRR8316899	Complete white stage	2.989
	SRR8316903	Complete white stage	0.734
	SRR8316902	Silver flowering stage	0.084
	SRR8316904	Silver flowering stage	0.347
	SRR8316905	Silver flowering stage	0.066
	SRR8316906	Gold flowering stage	0.599
	SRR8316907	Gold flowering stage	0.614
	SRR8316908	Gold flowering stage	0.324
SRP132670	SRR6706286	Control	6.734
	SRR6706287	Light intensity 50%	6.374
	SRR6706288	Light intensity 20%	5.699
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.664
	CNS0095593	Slightly white alabastrum(diploid) 2	15.303
	CNS0095594	Slightly white alabastrum(diploid) 3	24.734
	CNS0095595	Whole white alabastrum(diploid) 2	10.607
	CNS0095596	Whole white alabastrum(diploid) 3	10.297
	CNS0095597	Whole white alabastrum(diploid) 4	5.762
	CNS0095598	Silvery flower (diploied) 1	0.237
	CNS0095599	Silvery flower (diploied) 2	1.564
	CNS0095600	Silvery flower (diploied) 3	0.656
	CNS0095601	Golden flower (diploid) 1	0.992
	CNS0095602	Golden flower (diploid) 2	0.351
	CNS0095603	Golden flower (diploid) 3	0.399
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.841
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.749
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.236
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.114
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.201
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.505
	CNS0095610	Silvery flower (diploied) 1	2.799
	CNS0095611	Silvery flower (diploied) 2	1.720
	CNS0095612	Silvery flower (diploied) 3	1.371
	CNS0095613	Golden flower (tetraploid) 1	0.345
	CNS0095614	Golden flower (tetraploid) 2	0.986
	CNS0095615	Golden flower (tetraploid) 3	0.374
CRA001975	CRR073297	Stem 1	29.726
	CRR073298	Stem 2	20.336
	CRR073299	Stem 3	59.356
	CRR073300	Leaf 1	8.627
	CRR073301	Leaf 2	9.672
	CRR073302	Leaf 3	9.693
	CRR073303	Juvenile bud 1	6.320
	CRR073304	Juvenile bud 2	2.229
	CRR073305	Juvenile bud 3	2.252
	CRR073306	Third green 1	1.025
	CRR073307	Third green 2	1.064
	CRR073308	Third green 3	1.129
	CRR073309	Second white 1	0.104
	CRR073310	Second white 2	0.193
	CRR073311	Second white 3	0.002
	CRR073312	Silver flowering 1	0.211
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.054
	CRR073315	Gold flowering 1	10.716
	CRR073316	Gold flowering 2	9.619
	CRR073317	Gold flowering 3	15.162
	CRR073318	Tawny withering 1	9.226
	CRR073319	Tawny withering 2	4.088
	CRR073320	Tawny withering 3	5.985