Gene detail

Detail information of GWHGAAZE031387

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007051830.1	0	BR-signaling kinase 3 [Theobroma cacao]
COG	YP_284821.1	1E-13	protein kinase:GAF
Swissprot	tr\|Q9FHD7\|Y5126_ARATH	0	Probable serine/threonine-protein kinase At5g41260
trEMBL	tr\|A0A061DUB1\|A0A061DUB1_THECC	0	BR-signaling kinase 3 {ECO:0000313\|EMBL:EOX95987.1}
TAIR10	AT1G63500.1	0	Protein kinase protein with tetratricopeptide repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58239517	58245949	+
GWHAAZE00000009	mRNA	58239517	58245949	+
GWHAAZE00000009	exon	58239517	58239592	+
GWHAAZE00000009	exon	58239903	58240123	+
GWHAAZE00000009	exon	58240383	58240518	+
GWHAAZE00000009	exon	58241378	58241511	+
GWHAAZE00000009	exon	58241608	58241713	+
GWHAAZE00000009	exon	58242495	58242580	+
GWHAAZE00000009	exon	58242866	58243054	+
GWHAAZE00000009	exon	58243666	58243818	+
GWHAAZE00000009	exon	58244150	58244263	+
GWHAAZE00000009	exon	58245666	58245949	+
GWHAAZE00000009	CDS	58239517	58239592	+
GWHAAZE00000009	CDS	58239903	58240123	+
GWHAAZE00000009	CDS	58240383	58240518	+
GWHAAZE00000009	CDS	58241378	58241511	+
GWHAAZE00000009	CDS	58241608	58241713	+
GWHAAZE00000009	CDS	58242495	58242580	+
GWHAAZE00000009	CDS	58242866	58243054	+
GWHAAZE00000009	CDS	58243666	58243818	+
GWHAAZE00000009	CDS	58244150	58244263	+
GWHAAZE00000009	CDS	58245666	58245926	+
GWHAAZE00000009	three_prime_UTR	58245927	58245949	+

Transcript Sequence
>GWHTAAZE031423 ATGGGTTCTCACTGCTCCAAAATCATTCCATGTTGCTTGGTTTCACCATACAAGGCATCTGTTCTTGAGGAACCAGGGAATGAAGAGGATGGTGGGCTAAATATTGCACCAGCATTCCGTGAATTCACCTTGGAGCAACTTAGAAATGCCACATCTGGTTTTGCGGTGGAAAACATTGTTTCTGAGCATGGTGAAAAGGCTCCAAATGTTGTTTATAAAGGGAAGCTTGATAATCAGACGCGGATAGCTGTTAAGCGCTTTAACAGATCAGCCTGGCCCGATTCCCGGCAATTCTTGGATGAAGCAAGATCAGTTGGCCTACTCCGCAACAATAGGTTGGCAAATTTGCTGGGTTGTTGTTGTGAAGACGATGAGAGGCTGCTAGTGGCTGAATATATGCCCAACAATACGCTTGCAAAACACCTTTTTCACTGGGAAACACAACCAATGAAGTGGGCAATGAGATTGAGGGTGGTCCTACATCTTGCAGAAGCTCTTGAATACTGTACAAGTAAAGGCCGTGCCCTTTATCACGACCTAAATGCTTATAGAATTTTGTTTGATGAGGATGGTAATCCTAGACTCTCATGCTTTGGTCTGATGAAGAATAGTAGGGATGGAAAAAGCTACAGTACGAACTTGGCATTTACTCCTCCAGAGTATTTGAGAACTGGAAGAGTGACACCAGAGAGTGTGATGTATAGCTTTGGCACACTTTTGCTTGACCTTCTTAGTGGGAAACATATCCCTCCCAGCCACGCCCTTGACTTGATACGAGACAGGAACCTTCAGATGCTGACAGATTCGTGCTTGGAAGGACAGTTTACTAATGATGATGGGACTGATTTAGTACGCTTGGCTTCTCGCTGTTTGCAATACGAACCCCGAGAACGTCCAAATTCAAAATCTTTAGTCGCTGCTTTGGCTCCTCTCCAGAAGGAAACTGAGGTTCCTTCTCATATCTTGATGGGGATCACAAGCAGTGCTGCATTCACCCCTCAATCTCCACTTGGTGTAGCTTGCTCAAGAATGGACTTGACAGCCATACATGAGATCTTAGAAAAGACTGGTTATAAGGATGATGAGGGAGTCACAAACGAGCTGTCGTTCCAAATGTGGACTGATCAAATGCAGGAGGCACTAAATTCCAAGAAAAAGGGTGATAGCGCTTTCAGGCATAAAGAATCTAAAACTGCAATTGAGTGCTACACCCAGTTTATAGATTATGGACCGGTGGTTTCTCCAACGGTATTTGCACGGCGAAGTTTGTGTTATCTGATGAGCGACATGCCACAGGAAGCGCTAAACGATGCAATGCAAGCACAAGTGATTTCCCCTGTTTGGCACATTGCATCATTTCTACAAGCTACCTCCCTCTTGGCCCTTAAAATGGAAAATGAAGCACAAGTTGCCCTTAAGGAAGGTACAACTCTTGAAGCCAAAAGGAACAACACGTCTGCAGCAGTTGGACAATAACAAAAGTGAACTAAATGCTTTTG

Network for GWHGAAZE031387

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	70	307	2.40E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
K14500	BSK	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.918
	SRR3591706	second leaf	22.993
	SRR3591707	mature leaf	20.941
	SRR3591708	Shoot apex	28.802
	SRR3591709	Stem	28.977
	SRR3591710	White floral bud	44.028
	SRR3591711	White flower	45.470
	SRR3591712	Green floral bud	47.686
	SRR3591713	Yellow flower	40.724
SRP173429	SRR8316895	Juvenile bud stage	20.719
	SRR8316896	Juvenile bud stage	27.871
	SRR8316897	Juvenile bud stage	14.156
	SRR8316894	Third green stage	15.861
	SRR8316900	Third green stage	37.806
	SRR8316901	Third green stage	36.045
	SRR8316898	Complete white stage	21.060
	SRR8316899	Complete white stage	57.939
	SRR8316903	Complete white stage	28.543
	SRR8316902	Silver flowering stage	16.966
	SRR8316904	Silver flowering stage	25.081
	SRR8316905	Silver flowering stage	12.641
	SRR8316906	Gold flowering stage	37.306
	SRR8316907	Gold flowering stage	35.272
	SRR8316908	Gold flowering stage	41.321
SRP132670	SRR6706286	Control	31.757
	SRR6706287	Light intensity 50%	37.561
	SRR6706288	Light intensity 20%	39.232
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.698
	CNS0095593	Slightly white alabastrum(diploid) 2	20.961
	CNS0095594	Slightly white alabastrum(diploid) 3	16.543
	CNS0095595	Whole white alabastrum(diploid) 2	18.877
	CNS0095596	Whole white alabastrum(diploid) 3	13.371
	CNS0095597	Whole white alabastrum(diploid) 4	17.057
	CNS0095598	Silvery flower (diploied) 1	26.657
	CNS0095599	Silvery flower (diploied) 2	22.704
	CNS0095600	Silvery flower (diploied) 3	39.413
	CNS0095601	Golden flower (diploid) 1	18.791
	CNS0095602	Golden flower (diploid) 2	35.929
	CNS0095603	Golden flower (diploid) 3	33.571
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.997
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.880
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.138
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.372
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.956
	CNS0095610	Silvery flower (diploied) 1	37.627
	CNS0095611	Silvery flower (diploied) 2	37.657
	CNS0095612	Silvery flower (diploied) 3	28.748
	CNS0095613	Golden flower (tetraploid) 1	25.708
	CNS0095614	Golden flower (tetraploid) 2	27.413
	CNS0095615	Golden flower (tetraploid) 3	47.425
CRA001975	CRR073297	Stem 1	48.493
	CRR073298	Stem 2	42.987
	CRR073299	Stem 3	37.004
	CRR073300	Leaf 1	54.951
	CRR073301	Leaf 2	51.463
	CRR073302	Leaf 3	39.465
	CRR073303	Juvenile bud 1	38.877
	CRR073304	Juvenile bud 2	31.554
	CRR073305	Juvenile bud 3	42.102
	CRR073306	Third green 1	18.189
	CRR073307	Third green 2	16.307
	CRR073308	Third green 3	19.840
	CRR073309	Second white 1	17.839
	CRR073310	Second white 2	19.615
	CRR073311	Second white 3	18.553
	CRR073312	Silver flowering 1	21.304
	CRR073313	Silver flowering 2	21.633
	CRR073314	Silver flowering 3	22.607
	CRR073315	Gold flowering 1	18.583
	CRR073316	Gold flowering 2	26.740
	CRR073317	Gold flowering 3	16.445
	CRR073318	Tawny withering 1	34.559
	CRR073319	Tawny withering 2	32.232
	CRR073320	Tawny withering 3	34.368